Strain Fitness in Erwinia amylovora T8 around OLJFJH_01295

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01290 and OLJFJH_01295 are separated by 4 nucleotidesOLJFJH_01295 and OLJFJH_01300 are separated by 9 nucleotidesOLJFJH_01300 and OLJFJH_01305 are separated by 55 nucleotides OLJFJH_01290: OLJFJH_01290 - 3-isopropylmalate dehydrogenase, at 194,220 to 195,308 _01290 OLJFJH_01295: OLJFJH_01295 - 3-isopropylmalate dehydratase large subunit, at 195,313 to 196,710 _01295 OLJFJH_01300: OLJFJH_01300 - 3-isopropylmalate dehydratase small subunit, at 196,720 to 197,325 _01300 OLJFJH_01305: OLJFJH_01305 - MFS transporter, at 197,381 to 198,586 _01305 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 194.525 kb on + strand, within OLJFJH_01290at 194.652 kb on + strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.653 kb on - strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.718 kb on + strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.719 kb on - strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.750 kb on + strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.751 kb on - strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.849 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.888 kb on + strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.889 kb on - strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.892 kb on + strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 194.893 kb on - strand, within OLJFJH_01290at 195.151 kb on - strand, within OLJFJH_01290at 195.307 kb on - strandat 195.307 kb on - strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.326 kb on - strandat 195.326 kb on - strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.385 kb on + strandat 195.593 kb on + strand, within OLJFJH_01295at 195.593 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.855 kb on + strand, within OLJFJH_01295at 195.856 kb on - strand, within OLJFJH_01295at 195.969 kb on + strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.970 kb on - strand, within OLJFJH_01295at 195.972 kb on + strand, within OLJFJH_01295at 196.034 kb on - strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.037 kb on + strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.038 kb on - strand, within OLJFJH_01295at 196.051 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.282 kb on + strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.283 kb on - strand, within OLJFJH_01295at 196.284 kb on + strand, within OLJFJH_01295at 196.494 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.551 kb on + strand, within OLJFJH_01295at 196.743 kb on + strandat 196.743 kb on + strandat 196.852 kb on + strand, within OLJFJH_01300at 196.911 kb on + strand, within OLJFJH_01300at 197.068 kb on - strand, within OLJFJH_01300at 197.177 kb on + strand, within OLJFJH_01300at 197.178 kb on - strand, within OLJFJH_01300at 197.239 kb on - strand, within OLJFJH_01300at 197.504 kb on + strand, within OLJFJH_01305at 197.611 kb on + strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.612 kb on - strand, within OLJFJH_01305at 197.616 kb on - strand, within OLJFJH_01305at 197.616 kb on - strand, within OLJFJH_01305at 197.626 kb on + strand, within OLJFJH_01305

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
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194,525 + OLJFJH_01290 0.28 -0.1
194,652 + OLJFJH_01290 0.40 -4.2
194,653 - OLJFJH_01290 0.40 -3.1
194,653 - OLJFJH_01290 0.40 +1.2
194,718 + OLJFJH_01290 0.46 -1.1
194,718 + OLJFJH_01290 0.46 -3.4
194,718 + OLJFJH_01290 0.46 -1.7
194,719 - OLJFJH_01290 0.46 -0.7
194,719 - OLJFJH_01290 0.46 -0.6
194,750 + OLJFJH_01290 0.49 -0.8
194,750 + OLJFJH_01290 0.49 -0.3
194,751 - OLJFJH_01290 0.49 -1.6
194,751 - OLJFJH_01290 0.49 -1.1
194,751 - OLJFJH_01290 0.49 -1.7
194,849 + OLJFJH_01290 0.58 -0.8
194,849 + OLJFJH_01290 0.58 -2.4
194,849 + OLJFJH_01290 0.58 -0.8
194,888 + OLJFJH_01290 0.61 -0.8
194,888 + OLJFJH_01290 0.61 -1.3
194,888 + OLJFJH_01290 0.61 -2.4
194,889 - OLJFJH_01290 0.61 -1.9
194,889 - OLJFJH_01290 0.61 -2.2
194,889 - OLJFJH_01290 0.61 -2.9
194,889 - OLJFJH_01290 0.61 -2.5
194,889 - OLJFJH_01290 0.61 -1.3
194,889 - OLJFJH_01290 0.61 -2.0
194,892 + OLJFJH_01290 0.62 -1.9
194,892 + OLJFJH_01290 0.62 -2.1
194,892 + OLJFJH_01290 0.62 -0.1
194,892 + OLJFJH_01290 0.62 -1.3
194,892 + OLJFJH_01290 0.62 -0.3
194,892 + OLJFJH_01290 0.62 -2.7
194,892 + OLJFJH_01290 0.62 -2.1
194,892 + OLJFJH_01290 0.62 -1.1
194,892 + OLJFJH_01290 0.62 -1.1
194,892 + OLJFJH_01290 0.62 -1.1
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -0.8
194,892 + OLJFJH_01290 0.62 -2.6
194,892 + OLJFJH_01290 0.62 -1.3
194,892 + OLJFJH_01290 0.62 -1.5
194,892 + OLJFJH_01290 0.62 -1.4
194,892 + OLJFJH_01290 0.62 -1.1
194,892 + OLJFJH_01290 0.62 -1.1
194,892 + OLJFJH_01290 0.62 -0.6
194,893 - OLJFJH_01290 0.62 -1.5
194,893 - OLJFJH_01290 0.62 -0.9
194,893 - OLJFJH_01290 0.62 -0.8
194,893 - OLJFJH_01290 0.62 -1.2
194,893 - OLJFJH_01290 0.62 -1.1
194,893 - OLJFJH_01290 0.62 -1.9
194,893 - OLJFJH_01290 0.62 -1.7
194,893 - OLJFJH_01290 0.62 -1.3
194,893 - OLJFJH_01290 0.62 -0.2
194,893 - OLJFJH_01290 0.62 -0.2
194,893 - OLJFJH_01290 0.62 -1.1
194,893 - OLJFJH_01290 0.62 +0.7
194,893 - OLJFJH_01290 0.62 -1.0
194,893 - OLJFJH_01290 0.62 -2.1
194,893 - OLJFJH_01290 0.62 -0.9
195,151 - OLJFJH_01290 0.85 -1.1
195,307 - -1.6
195,307 - -0.5
195,310 - -3.3
195,310 - -3.0
195,310 - -0.6
195,325 + -1.4
195,325 + -0.4
195,325 + -1.0
195,326 - -2.4
195,326 - -1.7
195,385 + -1.2
195,385 + -1.5
195,385 + -2.8
195,385 + -1.3
195,593 + OLJFJH_01295 0.20 -0.2
195,593 + OLJFJH_01295 0.20 -1.8
195,855 + OLJFJH_01295 0.39 -2.6
195,855 + OLJFJH_01295 0.39 -1.0
195,855 + OLJFJH_01295 0.39 -2.0
195,856 - OLJFJH_01295 0.39 -1.9
195,969 + OLJFJH_01295 0.47 -0.4
195,970 - OLJFJH_01295 0.47 -2.2
195,970 - OLJFJH_01295 0.47 -2.7
195,972 + OLJFJH_01295 0.47 -1.2
196,034 - OLJFJH_01295 0.52 -1.6
196,037 + OLJFJH_01295 0.52 -2.5
196,037 + OLJFJH_01295 0.52 -0.5
196,037 + OLJFJH_01295 0.52 -2.0
196,038 - OLJFJH_01295 0.52 -0.6
196,038 - OLJFJH_01295 0.52 -2.2
196,038 - OLJFJH_01295 0.52 -0.1
196,051 + OLJFJH_01295 0.53 -0.5
196,282 + OLJFJH_01295 0.69 -1.2
196,282 + OLJFJH_01295 0.69 -2.3
196,282 + OLJFJH_01295 0.69 -0.6
196,283 - OLJFJH_01295 0.69 -0.9
196,283 - OLJFJH_01295 0.69 -0.5
196,284 + OLJFJH_01295 0.69 -1.6
196,494 + OLJFJH_01295 0.84 -0.9
196,551 + OLJFJH_01295 0.89 -1.6
196,551 + OLJFJH_01295 0.89 -2.1
196,551 + OLJFJH_01295 0.89 -2.4
196,743 + -2.9
196,743 + -1.4
196,852 + OLJFJH_01300 0.22 -1.0
196,911 + OLJFJH_01300 0.32 -3.8
197,068 - OLJFJH_01300 0.57 -1.6
197,177 + OLJFJH_01300 0.75 -0.8
197,178 - OLJFJH_01300 0.76 -3.2
197,239 - OLJFJH_01300 0.86 -1.7
197,504 + OLJFJH_01305 0.10 -0.2
197,611 + OLJFJH_01305 0.19 -0.6
197,612 - OLJFJH_01305 0.19 +1.5
197,612 - OLJFJH_01305 0.19 +0.7
197,612 - OLJFJH_01305 0.19 -1.2
197,616 - OLJFJH_01305 0.19 +1.0
197,616 - OLJFJH_01305 0.19 +1.1
197,626 + OLJFJH_01305 0.20 +0.1

Or see this region's nucleotide sequence