Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_00590 and OLJFJH_00595 are separated by 54 nucleotides OLJFJH_00595 and OLJFJH_00600 are separated by 9 nucleotides OLJFJH_00600 and OLJFJH_00605 are separated by 18 nucleotides
OLJFJH_00590: OLJFJH_00590 - Outer membrane protein assembly factor BamA, at 29,286 to 31,697
_00590
OLJFJH_00595: OLJFJH_00595 - sigma E protease regulator RseP, at 31,752 to 33,101
_00595
OLJFJH_00600: OLJFJH_00600 - phosphatidate cytidylyltransferase, at 33,111 to 33,968
_00600
OLJFJH_00605: OLJFJH_00605 - (2E 6E)-farnesyl-diphosphate-specific ditrans polycis-undecaprenyl-diphosphate synthase, at 33,987 to 34,739
_00605
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 31.823 kb on - strand at 31.903 kb on - strand, within OLJFJH_00595 at 31.903 kb on - strand, within OLJFJH_00595 at 31.903 kb on - strand, within OLJFJH_00595 at 31.973 kb on - strand, within OLJFJH_00595 at 31.973 kb on - strand, within OLJFJH_00595 at 32.184 kb on - strand, within OLJFJH_00595 at 32.184 kb on - strand, within OLJFJH_00595 at 32.259 kb on - strand, within OLJFJH_00595 at 32.304 kb on - strand, within OLJFJH_00595 at 32.361 kb on - strand, within OLJFJH_00595 at 32.649 kb on - strand, within OLJFJH_00595 at 32.649 kb on - strand, within OLJFJH_00595 at 32.741 kb on + strand, within OLJFJH_00595 at 32.927 kb on - strand, within OLJFJH_00595 at 33.048 kb on + strand at 33.049 kb on - strand at 33.049 kb on - strand at 33.049 kb on - strand at 33.091 kb on - strand at 33.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-3 remove 31,823 - -4.2 31,903 - OLJFJH_00595 0.11 +0.3 31,903 - OLJFJH_00595 0.11 -0.1 31,903 - OLJFJH_00595 0.11 -2.3 31,973 - OLJFJH_00595 0.16 -2.4 31,973 - OLJFJH_00595 0.16 +1.2 32,184 - OLJFJH_00595 0.32 -2.4 32,184 - OLJFJH_00595 0.32 -1.8 32,259 - OLJFJH_00595 0.38 -4.8 32,304 - OLJFJH_00595 0.41 -1.3 32,361 - OLJFJH_00595 0.45 -0.7 32,649 - OLJFJH_00595 0.66 -3.2 32,649 - OLJFJH_00595 0.66 -2.9 32,741 + OLJFJH_00595 0.73 -1.2 32,927 - OLJFJH_00595 0.87 -3.0 33,048 + -1.4 33,049 - -2.2 33,049 - -3.5 33,049 - -3.3 33,091 - -3.0 33,113 - +0.0
Or see this region's nucleotide sequence