Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00659

Experiment: Sew9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00657 and OHPLBJKB_00658 are separated by 1 nucleotidesOHPLBJKB_00658 and OHPLBJKB_00659 are separated by 21 nucleotidesOHPLBJKB_00659 and OHPLBJKB_00660 are separated by 50 nucleotidesOHPLBJKB_00660 and OHPLBJKB_00661 are separated by 283 nucleotides OHPLBJKB_00657: OHPLBJKB_00657 - hypothetical protein, at 675,707 to 676,771 _00657 OHPLBJKB_00658: OHPLBJKB_00658 - Chaperone protein PapD, at 676,773 to 677,522 _00658 OHPLBJKB_00659: OHPLBJKB_00659 - Outer membrane usher protein PapC, at 677,544 to 680,054 _00659 OHPLBJKB_00660: OHPLBJKB_00660 - putative fimbrial-like protein YbgD, at 680,105 to 680,656 _00660 OHPLBJKB_00661: OHPLBJKB_00661 - putative protein YqiC, at 680,940 to 681,230 _00661 Position (kb) 677 678 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 676.573 kb on + strand, within OHPLBJKB_00657at 676.659 kb on + strand, within OHPLBJKB_00657at 676.660 kb on - strand, within OHPLBJKB_00657at 676.660 kb on - strand, within OHPLBJKB_00657at 676.699 kb on - strandat 676.742 kb on - strandat 676.758 kb on - strandat 676.811 kb on + strandat 676.868 kb on - strand, within OHPLBJKB_00658at 676.979 kb on + strand, within OHPLBJKB_00658at 676.992 kb on - strand, within OHPLBJKB_00658at 677.482 kb on - strandat 677.634 kb on + strandat 677.671 kb on + strandat 677.673 kb on + strandat 677.673 kb on + strandat 677.674 kb on - strandat 677.674 kb on - strandat 677.728 kb on - strandat 677.789 kb on - strandat 677.913 kb on + strand, within OHPLBJKB_00659at 677.913 kb on + strand, within OHPLBJKB_00659at 677.914 kb on - strand, within OHPLBJKB_00659at 677.914 kb on - strand, within OHPLBJKB_00659at 677.918 kb on - strand, within OHPLBJKB_00659at 677.936 kb on + strand, within OHPLBJKB_00659at 677.957 kb on + strand, within OHPLBJKB_00659at 678.015 kb on - strand, within OHPLBJKB_00659at 678.038 kb on + strand, within OHPLBJKB_00659at 678.040 kb on + strand, within OHPLBJKB_00659at 678.041 kb on - strand, within OHPLBJKB_00659at 678.109 kb on + strand, within OHPLBJKB_00659at 678.109 kb on + strand, within OHPLBJKB_00659at 678.109 kb on + strand, within OHPLBJKB_00659at 678.140 kb on - strand, within OHPLBJKB_00659at 678.161 kb on + strand, within OHPLBJKB_00659at 678.162 kb on - strand, within OHPLBJKB_00659at 678.170 kb on - strand, within OHPLBJKB_00659at 678.195 kb on - strand, within OHPLBJKB_00659at 678.309 kb on - strand, within OHPLBJKB_00659at 678.309 kb on - strand, within OHPLBJKB_00659at 678.358 kb on + strand, within OHPLBJKB_00659at 678.418 kb on - strand, within OHPLBJKB_00659at 678.466 kb on + strand, within OHPLBJKB_00659at 678.476 kb on + strand, within OHPLBJKB_00659at 678.477 kb on - strand, within OHPLBJKB_00659at 678.517 kb on + strand, within OHPLBJKB_00659at 678.517 kb on + strand, within OHPLBJKB_00659at 678.518 kb on - strand, within OHPLBJKB_00659at 678.522 kb on - strand, within OHPLBJKB_00659at 678.596 kb on - strand, within OHPLBJKB_00659at 678.614 kb on + strand, within OHPLBJKB_00659at 678.615 kb on - strand, within OHPLBJKB_00659at 678.616 kb on + strand, within OHPLBJKB_00659at 678.704 kb on - strand, within OHPLBJKB_00659at 678.708 kb on - strand, within OHPLBJKB_00659at 678.719 kb on + strand, within OHPLBJKB_00659at 678.719 kb on + strand, within OHPLBJKB_00659at 678.719 kb on + strand, within OHPLBJKB_00659at 678.743 kb on + strand, within OHPLBJKB_00659at 678.747 kb on + strand, within OHPLBJKB_00659at 678.748 kb on - strand, within OHPLBJKB_00659at 678.803 kb on + strand, within OHPLBJKB_00659at 678.846 kb on + strand, within OHPLBJKB_00659at 678.849 kb on + strand, within OHPLBJKB_00659at 678.863 kb on - strand, within OHPLBJKB_00659at 678.863 kb on - strand, within OHPLBJKB_00659at 678.870 kb on + strand, within OHPLBJKB_00659at 678.870 kb on + strand, within OHPLBJKB_00659at 678.965 kb on + strand, within OHPLBJKB_00659at 678.965 kb on + strand, within OHPLBJKB_00659at 678.966 kb on - strand, within OHPLBJKB_00659at 678.966 kb on - strand, within OHPLBJKB_00659at 679.007 kb on + strand, within OHPLBJKB_00659at 679.008 kb on - strand, within OHPLBJKB_00659at 679.008 kb on - strand, within OHPLBJKB_00659at 679.008 kb on - strand, within OHPLBJKB_00659at 679.010 kb on + strand, within OHPLBJKB_00659at 679.010 kb on + strand, within OHPLBJKB_00659at 679.010 kb on + strand, within OHPLBJKB_00659at 679.010 kb on + strand, within OHPLBJKB_00659at 679.011 kb on - strand, within OHPLBJKB_00659at 679.011 kb on - strand, within OHPLBJKB_00659at 679.082 kb on + strand, within OHPLBJKB_00659at 679.082 kb on + strand, within OHPLBJKB_00659at 679.137 kb on - strand, within OHPLBJKB_00659at 679.137 kb on - strand, within OHPLBJKB_00659at 679.137 kb on - strand, within OHPLBJKB_00659at 679.212 kb on + strand, within OHPLBJKB_00659at 679.306 kb on - strand, within OHPLBJKB_00659at 679.306 kb on - strand, within OHPLBJKB_00659at 679.307 kb on + strand, within OHPLBJKB_00659at 679.308 kb on - strand, within OHPLBJKB_00659at 679.308 kb on - strand, within OHPLBJKB_00659at 679.408 kb on + strand, within OHPLBJKB_00659at 679.462 kb on + strand, within OHPLBJKB_00659at 679.518 kb on + strand, within OHPLBJKB_00659at 679.547 kb on + strand, within OHPLBJKB_00659at 679.617 kb on + strand, within OHPLBJKB_00659at 679.617 kb on + strand, within OHPLBJKB_00659at 679.618 kb on - strand, within OHPLBJKB_00659at 679.648 kb on + strand, within OHPLBJKB_00659at 679.789 kb on - strand, within OHPLBJKB_00659at 679.853 kb on - strandat 679.867 kb on - strandat 680.016 kb on + strandat 680.057 kb on - strandat 680.057 kb on - strandat 680.124 kb on + strandat 680.140 kb on - strandat 680.216 kb on - strand, within OHPLBJKB_00660at 680.227 kb on + strand, within OHPLBJKB_00660at 680.227 kb on + strand, within OHPLBJKB_00660at 680.228 kb on - strand, within OHPLBJKB_00660at 680.228 kb on - strand, within OHPLBJKB_00660at 680.231 kb on + strand, within OHPLBJKB_00660at 680.231 kb on + strand, within OHPLBJKB_00660at 680.231 kb on + strand, within OHPLBJKB_00660at 680.243 kb on - strand, within OHPLBJKB_00660at 680.246 kb on + strand, within OHPLBJKB_00660at 680.253 kb on - strand, within OHPLBJKB_00660at 680.282 kb on + strand, within OHPLBJKB_00660at 680.282 kb on + strand, within OHPLBJKB_00660at 680.283 kb on - strand, within OHPLBJKB_00660at 680.365 kb on + strand, within OHPLBJKB_00660at 680.392 kb on - strand, within OHPLBJKB_00660at 680.396 kb on - strand, within OHPLBJKB_00660at 680.480 kb on - strand, within OHPLBJKB_00660at 680.486 kb on + strand, within OHPLBJKB_00660at 680.808 kb on - strandat 680.905 kb on + strandat 680.991 kb on - strand, within OHPLBJKB_00661

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Per-strain Table

Position Strand Gene LocusTag Fraction Sew9
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676,573 + OHPLBJKB_00657 0.81 -2.0
676,659 + OHPLBJKB_00657 0.89 -1.1
676,660 - OHPLBJKB_00657 0.89 -0.1
676,660 - OHPLBJKB_00657 0.89 -0.4
676,699 - +0.0
676,742 - -0.1
676,758 - +1.2
676,811 + +1.2
676,868 - OHPLBJKB_00658 0.13 -0.2
676,979 + OHPLBJKB_00658 0.27 -0.3
676,992 - OHPLBJKB_00658 0.29 -1.5
677,482 - -1.7
677,634 + -0.4
677,671 + +0.2
677,673 + +0.1
677,673 + +0.5
677,674 - -0.6
677,674 - -1.8
677,728 - -0.3
677,789 - +1.3
677,913 + OHPLBJKB_00659 0.15 +0.0
677,913 + OHPLBJKB_00659 0.15 -0.6
677,914 - OHPLBJKB_00659 0.15 -0.5
677,914 - OHPLBJKB_00659 0.15 +0.5
677,918 - OHPLBJKB_00659 0.15 -0.8
677,936 + OHPLBJKB_00659 0.16 +1.5
677,957 + OHPLBJKB_00659 0.16 -0.2
678,015 - OHPLBJKB_00659 0.19 -1.5
678,038 + OHPLBJKB_00659 0.20 -0.6
678,040 + OHPLBJKB_00659 0.20 -0.0
678,041 - OHPLBJKB_00659 0.20 +0.1
678,109 + OHPLBJKB_00659 0.23 +0.9
678,109 + OHPLBJKB_00659 0.23 -1.7
678,109 + OHPLBJKB_00659 0.23 -0.6
678,140 - OHPLBJKB_00659 0.24 -2.2
678,161 + OHPLBJKB_00659 0.25 -0.3
678,162 - OHPLBJKB_00659 0.25 +0.8
678,170 - OHPLBJKB_00659 0.25 +0.9
678,195 - OHPLBJKB_00659 0.26 +0.3
678,309 - OHPLBJKB_00659 0.30 -0.7
678,309 - OHPLBJKB_00659 0.30 -1.0
678,358 + OHPLBJKB_00659 0.32 +0.2
678,418 - OHPLBJKB_00659 0.35 -0.1
678,466 + OHPLBJKB_00659 0.37 -0.6
678,476 + OHPLBJKB_00659 0.37 -1.0
678,477 - OHPLBJKB_00659 0.37 -1.2
678,517 + OHPLBJKB_00659 0.39 +0.5
678,517 + OHPLBJKB_00659 0.39 -0.5
678,518 - OHPLBJKB_00659 0.39 +0.3
678,522 - OHPLBJKB_00659 0.39 +1.2
678,596 - OHPLBJKB_00659 0.42 +0.1
678,614 + OHPLBJKB_00659 0.43 +0.2
678,615 - OHPLBJKB_00659 0.43 +0.0
678,616 + OHPLBJKB_00659 0.43 +0.1
678,704 - OHPLBJKB_00659 0.46 -0.5
678,708 - OHPLBJKB_00659 0.46 +0.5
678,719 + OHPLBJKB_00659 0.47 +0.4
678,719 + OHPLBJKB_00659 0.47 +0.3
678,719 + OHPLBJKB_00659 0.47 +0.5
678,743 + OHPLBJKB_00659 0.48 -1.0
678,747 + OHPLBJKB_00659 0.48 -0.5
678,748 - OHPLBJKB_00659 0.48 -0.2
678,803 + OHPLBJKB_00659 0.50 +0.1
678,846 + OHPLBJKB_00659 0.52 +0.7
678,849 + OHPLBJKB_00659 0.52 +0.0
678,863 - OHPLBJKB_00659 0.53 +0.7
678,863 - OHPLBJKB_00659 0.53 +0.2
678,870 + OHPLBJKB_00659 0.53 -1.2
678,870 + OHPLBJKB_00659 0.53 -1.0
678,965 + OHPLBJKB_00659 0.57 -2.0
678,965 + OHPLBJKB_00659 0.57 +1.3
678,966 - OHPLBJKB_00659 0.57 +0.3
678,966 - OHPLBJKB_00659 0.57 -0.5
679,007 + OHPLBJKB_00659 0.58 +0.8
679,008 - OHPLBJKB_00659 0.58 -1.0
679,008 - OHPLBJKB_00659 0.58 +1.6
679,008 - OHPLBJKB_00659 0.58 +0.2
679,010 + OHPLBJKB_00659 0.58 -0.3
679,010 + OHPLBJKB_00659 0.58 +0.9
679,010 + OHPLBJKB_00659 0.58 -1.4
679,010 + OHPLBJKB_00659 0.58 -1.0
679,011 - OHPLBJKB_00659 0.58 -1.8
679,011 - OHPLBJKB_00659 0.58 +2.9
679,082 + OHPLBJKB_00659 0.61 -0.0
679,082 + OHPLBJKB_00659 0.61 +0.5
679,137 - OHPLBJKB_00659 0.63 -0.2
679,137 - OHPLBJKB_00659 0.63 +0.1
679,137 - OHPLBJKB_00659 0.63 +0.1
679,212 + OHPLBJKB_00659 0.66 +0.0
679,306 - OHPLBJKB_00659 0.70 +0.4
679,306 - OHPLBJKB_00659 0.70 -0.9
679,307 + OHPLBJKB_00659 0.70 -0.5
679,308 - OHPLBJKB_00659 0.70 -0.9
679,308 - OHPLBJKB_00659 0.70 -0.1
679,408 + OHPLBJKB_00659 0.74 +0.3
679,462 + OHPLBJKB_00659 0.76 -1.2
679,518 + OHPLBJKB_00659 0.79 -0.5
679,547 + OHPLBJKB_00659 0.80 +0.7
679,617 + OHPLBJKB_00659 0.83 -2.8
679,617 + OHPLBJKB_00659 0.83 -0.3
679,618 - OHPLBJKB_00659 0.83 -0.1
679,648 + OHPLBJKB_00659 0.84 -0.2
679,789 - OHPLBJKB_00659 0.89 +0.7
679,853 - +0.5
679,867 - +1.5
680,016 + -0.5
680,057 - +0.9
680,057 - +0.2
680,124 + +0.9
680,140 - -0.1
680,216 - OHPLBJKB_00660 0.20 -1.3
680,227 + OHPLBJKB_00660 0.22 -0.5
680,227 + OHPLBJKB_00660 0.22 -0.1
680,228 - OHPLBJKB_00660 0.22 -0.5
680,228 - OHPLBJKB_00660 0.22 +0.3
680,231 + OHPLBJKB_00660 0.23 -1.1
680,231 + OHPLBJKB_00660 0.23 -0.2
680,231 + OHPLBJKB_00660 0.23 -0.3
680,243 - OHPLBJKB_00660 0.25 +1.0
680,246 + OHPLBJKB_00660 0.26 +0.0
680,253 - OHPLBJKB_00660 0.27 +0.3
680,282 + OHPLBJKB_00660 0.32 -0.6
680,282 + OHPLBJKB_00660 0.32 +0.2
680,283 - OHPLBJKB_00660 0.32 +0.5
680,365 + OHPLBJKB_00660 0.47 -1.4
680,392 - OHPLBJKB_00660 0.52 +0.3
680,396 - OHPLBJKB_00660 0.53 -1.4
680,480 - OHPLBJKB_00660 0.68 +0.5
680,486 + OHPLBJKB_00660 0.69 +0.8
680,808 - +0.5
680,905 + +0.5
680,991 - OHPLBJKB_00661 0.18 -0.9

Or see this region's nucleotide sequence