Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00349

Experiment: Sew9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00347 and OHPLBJKB_00348 are separated by 53 nucleotidesOHPLBJKB_00348 and OHPLBJKB_00349 overlap by 7 nucleotidesOHPLBJKB_00349 and OHPLBJKB_00350 overlap by 1 nucleotides OHPLBJKB_00347: OHPLBJKB_00347 - Phosphoribulokinase, plasmid, at 381,199 to 382,068 _00347 OHPLBJKB_00348: OHPLBJKB_00348 - hypothetical protein, at 382,122 to 382,340 _00348 OHPLBJKB_00349: OHPLBJKB_00349 - hypothetical protein, at 382,334 to 383,356 _00349 OHPLBJKB_00350: OHPLBJKB_00350 - putative ABC transporter ATP-binding protein YheS, at 383,356 to 385,269 _00350 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 381.459 kb on + strand, within OHPLBJKB_00347at 381.460 kb on - strand, within OHPLBJKB_00347at 381.491 kb on + strand, within OHPLBJKB_00347at 381.491 kb on + strand, within OHPLBJKB_00347at 381.492 kb on - strand, within OHPLBJKB_00347at 381.492 kb on - strand, within OHPLBJKB_00347at 381.492 kb on - strand, within OHPLBJKB_00347at 381.492 kb on - strand, within OHPLBJKB_00347at 381.498 kb on + strand, within OHPLBJKB_00347at 381.498 kb on + strand, within OHPLBJKB_00347at 381.498 kb on + strand, within OHPLBJKB_00347at 381.498 kb on + strand, within OHPLBJKB_00347at 381.499 kb on - strand, within OHPLBJKB_00347at 381.499 kb on - strand, within OHPLBJKB_00347at 381.499 kb on - strand, within OHPLBJKB_00347at 381.500 kb on + strand, within OHPLBJKB_00347at 381.500 kb on + strand, within OHPLBJKB_00347at 381.500 kb on + strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.501 kb on - strand, within OHPLBJKB_00347at 381.520 kb on + strand, within OHPLBJKB_00347at 381.521 kb on - strand, within OHPLBJKB_00347at 381.521 kb on - strand, within OHPLBJKB_00347at 381.622 kb on + strand, within OHPLBJKB_00347at 381.623 kb on - strand, within OHPLBJKB_00347at 381.623 kb on - strand, within OHPLBJKB_00347at 381.645 kb on + strand, within OHPLBJKB_00347at 381.645 kb on + strand, within OHPLBJKB_00347at 381.683 kb on + strand, within OHPLBJKB_00347at 381.684 kb on - strand, within OHPLBJKB_00347at 381.684 kb on - strand, within OHPLBJKB_00347at 381.691 kb on + strand, within OHPLBJKB_00347at 381.691 kb on + strand, within OHPLBJKB_00347at 381.692 kb on - strand, within OHPLBJKB_00347at 381.692 kb on - strand, within OHPLBJKB_00347at 381.692 kb on - strand, within OHPLBJKB_00347at 381.692 kb on - strand, within OHPLBJKB_00347at 381.692 kb on - strand, within OHPLBJKB_00347at 381.767 kb on + strand, within OHPLBJKB_00347at 381.767 kb on + strand, within OHPLBJKB_00347at 381.768 kb on - strand, within OHPLBJKB_00347at 381.768 kb on - strand, within OHPLBJKB_00347at 381.771 kb on + strand, within OHPLBJKB_00347at 381.771 kb on + strand, within OHPLBJKB_00347at 381.771 kb on + strand, within OHPLBJKB_00347at 381.772 kb on - strand, within OHPLBJKB_00347at 381.779 kb on + strand, within OHPLBJKB_00347at 381.812 kb on + strand, within OHPLBJKB_00347at 381.812 kb on + strand, within OHPLBJKB_00347at 381.867 kb on - strand, within OHPLBJKB_00347at 381.867 kb on - strand, within OHPLBJKB_00347at 381.874 kb on - strand, within OHPLBJKB_00347at 381.930 kb on - strand, within OHPLBJKB_00347at 382.084 kb on + strandat 382.084 kb on + strandat 382.084 kb on + strandat 382.085 kb on - strandat 382.085 kb on - strandat 382.089 kb on - strandat 382.089 kb on - strandat 382.089 kb on - strandat 382.094 kb on + strandat 382.151 kb on + strand, within OHPLBJKB_00348at 382.203 kb on + strand, within OHPLBJKB_00348at 382.241 kb on + strand, within OHPLBJKB_00348at 382.242 kb on - strand, within OHPLBJKB_00348at 382.242 kb on - strand, within OHPLBJKB_00348at 382.242 kb on - strand, within OHPLBJKB_00348at 382.276 kb on - strand, within OHPLBJKB_00348at 382.276 kb on - strand, within OHPLBJKB_00348at 382.356 kb on + strandat 382.356 kb on + strandat 382.356 kb on + strandat 382.356 kb on + strandat 382.357 kb on - strandat 382.357 kb on - strandat 382.357 kb on - strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.409 kb on + strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.410 kb on - strandat 382.415 kb on - strandat 382.424 kb on - strandat 382.458 kb on + strand, within OHPLBJKB_00349at 382.459 kb on - strand, within OHPLBJKB_00349at 382.511 kb on - strand, within OHPLBJKB_00349at 382.579 kb on + strand, within OHPLBJKB_00349at 382.580 kb on - strand, within OHPLBJKB_00349at 382.590 kb on + strand, within OHPLBJKB_00349at 382.590 kb on + strand, within OHPLBJKB_00349at 382.594 kb on - strand, within OHPLBJKB_00349at 382.634 kb on + strand, within OHPLBJKB_00349at 382.634 kb on + strand, within OHPLBJKB_00349at 382.634 kb on + strand, within OHPLBJKB_00349at 382.635 kb on - strand, within OHPLBJKB_00349at 382.635 kb on - strand, within OHPLBJKB_00349at 382.753 kb on - strand, within OHPLBJKB_00349at 382.786 kb on + strand, within OHPLBJKB_00349at 382.791 kb on + strand, within OHPLBJKB_00349at 382.791 kb on + strand, within OHPLBJKB_00349at 382.791 kb on + strand, within OHPLBJKB_00349at 382.791 kb on + strand, within OHPLBJKB_00349at 382.791 kb on + strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.792 kb on - strand, within OHPLBJKB_00349at 382.795 kb on + strand, within OHPLBJKB_00349at 382.885 kb on + strand, within OHPLBJKB_00349at 382.886 kb on - strand, within OHPLBJKB_00349at 382.886 kb on - strand, within OHPLBJKB_00349at 382.886 kb on - strand, within OHPLBJKB_00349at 382.953 kb on - strand, within OHPLBJKB_00349at 382.990 kb on - strand, within OHPLBJKB_00349at 382.990 kb on - strand, within OHPLBJKB_00349at 383.099 kb on - strand, within OHPLBJKB_00349at 383.132 kb on + strand, within OHPLBJKB_00349at 383.144 kb on - strand, within OHPLBJKB_00349at 383.144 kb on - strand, within OHPLBJKB_00349at 383.296 kb on + strandat 383.499 kb on - strandat 383.499 kb on - strandat 383.587 kb on - strand, within OHPLBJKB_00350at 383.705 kb on - strand, within OHPLBJKB_00350at 383.726 kb on + strand, within OHPLBJKB_00350at 383.761 kb on - strand, within OHPLBJKB_00350at 383.942 kb on - strand, within OHPLBJKB_00350at 383.998 kb on + strand, within OHPLBJKB_00350at 383.998 kb on + strand, within OHPLBJKB_00350at 383.999 kb on - strand, within OHPLBJKB_00350at 383.999 kb on - strand, within OHPLBJKB_00350at 383.999 kb on - strand, within OHPLBJKB_00350at 384.033 kb on - strand, within OHPLBJKB_00350at 384.087 kb on + strand, within OHPLBJKB_00350at 384.087 kb on + strand, within OHPLBJKB_00350at 384.088 kb on - strand, within OHPLBJKB_00350at 384.110 kb on + strand, within OHPLBJKB_00350at 384.135 kb on - strand, within OHPLBJKB_00350at 384.291 kb on + strand, within OHPLBJKB_00350at 384.292 kb on - strand, within OHPLBJKB_00350

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Per-strain Table

Position Strand Gene LocusTag Fraction Sew9
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381,459 + OHPLBJKB_00347 0.30 +1.5
381,460 - OHPLBJKB_00347 0.30 -1.3
381,491 + OHPLBJKB_00347 0.34 +0.8
381,491 + OHPLBJKB_00347 0.34 -0.7
381,492 - OHPLBJKB_00347 0.34 -0.3
381,492 - OHPLBJKB_00347 0.34 -0.5
381,492 - OHPLBJKB_00347 0.34 -0.4
381,492 - OHPLBJKB_00347 0.34 -0.2
381,498 + OHPLBJKB_00347 0.34 -0.6
381,498 + OHPLBJKB_00347 0.34 +0.7
381,498 + OHPLBJKB_00347 0.34 -0.9
381,498 + OHPLBJKB_00347 0.34 +0.4
381,499 - OHPLBJKB_00347 0.34 +0.5
381,499 - OHPLBJKB_00347 0.34 +0.2
381,499 - OHPLBJKB_00347 0.34 +0.4
381,500 + OHPLBJKB_00347 0.35 -0.4
381,500 + OHPLBJKB_00347 0.35 +0.2
381,500 + OHPLBJKB_00347 0.35 -0.3
381,501 - OHPLBJKB_00347 0.35 +1.0
381,501 - OHPLBJKB_00347 0.35 -0.6
381,501 - OHPLBJKB_00347 0.35 +0.9
381,501 - OHPLBJKB_00347 0.35 -1.0
381,501 - OHPLBJKB_00347 0.35 +0.2
381,501 - OHPLBJKB_00347 0.35 -0.1
381,520 + OHPLBJKB_00347 0.37 -0.3
381,521 - OHPLBJKB_00347 0.37 -1.8
381,521 - OHPLBJKB_00347 0.37 -0.4
381,622 + OHPLBJKB_00347 0.49 +0.2
381,623 - OHPLBJKB_00347 0.49 -1.5
381,623 - OHPLBJKB_00347 0.49 +0.5
381,645 + OHPLBJKB_00347 0.51 +0.2
381,645 + OHPLBJKB_00347 0.51 -0.4
381,683 + OHPLBJKB_00347 0.56 +0.1
381,684 - OHPLBJKB_00347 0.56 -0.3
381,684 - OHPLBJKB_00347 0.56 -1.1
381,691 + OHPLBJKB_00347 0.57 +0.0
381,691 + OHPLBJKB_00347 0.57 -0.3
381,692 - OHPLBJKB_00347 0.57 -1.5
381,692 - OHPLBJKB_00347 0.57 -0.5
381,692 - OHPLBJKB_00347 0.57 +0.8
381,692 - OHPLBJKB_00347 0.57 -0.5
381,692 - OHPLBJKB_00347 0.57 -0.2
381,767 + OHPLBJKB_00347 0.65 +0.1
381,767 + OHPLBJKB_00347 0.65 -0.5
381,768 - OHPLBJKB_00347 0.65 +0.5
381,768 - OHPLBJKB_00347 0.65 -0.3
381,771 + OHPLBJKB_00347 0.66 -2.4
381,771 + OHPLBJKB_00347 0.66 +0.5
381,771 + OHPLBJKB_00347 0.66 -0.4
381,772 - OHPLBJKB_00347 0.66 -1.0
381,779 + OHPLBJKB_00347 0.67 -0.5
381,812 + OHPLBJKB_00347 0.70 +0.5
381,812 + OHPLBJKB_00347 0.70 -0.3
381,867 - OHPLBJKB_00347 0.77 +0.4
381,867 - OHPLBJKB_00347 0.77 -0.1
381,874 - OHPLBJKB_00347 0.78 +1.5
381,930 - OHPLBJKB_00347 0.84 -0.6
382,084 + -0.3
382,084 + +0.7
382,084 + -0.5
382,085 - -0.1
382,085 - -0.3
382,089 - +0.6
382,089 - -0.9
382,089 - +0.3
382,094 + +0.5
382,151 + OHPLBJKB_00348 0.13 +1.0
382,203 + OHPLBJKB_00348 0.37 -0.3
382,241 + OHPLBJKB_00348 0.54 +0.1
382,242 - OHPLBJKB_00348 0.55 +0.4
382,242 - OHPLBJKB_00348 0.55 +0.2
382,242 - OHPLBJKB_00348 0.55 -0.5
382,276 - OHPLBJKB_00348 0.70 -0.7
382,276 - OHPLBJKB_00348 0.70 -0.5
382,356 + +0.3
382,356 + -0.5
382,356 + +0.8
382,356 + +1.0
382,357 - -1.4
382,357 - +0.2
382,357 - -0.2
382,409 + -1.0
382,409 + +0.9
382,409 + -1.0
382,409 + -0.0
382,409 + +0.5
382,409 + -0.2
382,409 + +1.1
382,409 + -0.1
382,409 + -0.1
382,409 + +0.4
382,409 + +1.0
382,409 + -0.8
382,409 + +2.1
382,409 + -0.0
382,409 + +0.8
382,410 - -0.7
382,410 - +0.0
382,410 - -0.6
382,410 - -0.5
382,410 - -0.1
382,410 - -1.7
382,410 - -0.0
382,410 - -1.0
382,410 - +0.5
382,410 - -0.2
382,415 - -0.0
382,424 - -0.3
382,458 + OHPLBJKB_00349 0.12 +1.2
382,459 - OHPLBJKB_00349 0.12 +0.9
382,511 - OHPLBJKB_00349 0.17 +0.5
382,579 + OHPLBJKB_00349 0.24 +0.2
382,580 - OHPLBJKB_00349 0.24 -0.0
382,590 + OHPLBJKB_00349 0.25 -0.2
382,590 + OHPLBJKB_00349 0.25 -0.1
382,594 - OHPLBJKB_00349 0.25 +1.1
382,634 + OHPLBJKB_00349 0.29 -0.2
382,634 + OHPLBJKB_00349 0.29 +0.7
382,634 + OHPLBJKB_00349 0.29 -0.1
382,635 - OHPLBJKB_00349 0.29 +0.4
382,635 - OHPLBJKB_00349 0.29 +0.4
382,753 - OHPLBJKB_00349 0.41 -0.0
382,786 + OHPLBJKB_00349 0.44 +0.8
382,791 + OHPLBJKB_00349 0.45 +2.0
382,791 + OHPLBJKB_00349 0.45 +0.1
382,791 + OHPLBJKB_00349 0.45 -0.6
382,791 + OHPLBJKB_00349 0.45 +1.1
382,791 + OHPLBJKB_00349 0.45 +0.8
382,792 - OHPLBJKB_00349 0.45 +0.3
382,792 - OHPLBJKB_00349 0.45 -0.0
382,792 - OHPLBJKB_00349 0.45 +0.7
382,792 - OHPLBJKB_00349 0.45 +1.0
382,792 - OHPLBJKB_00349 0.45 +0.3
382,792 - OHPLBJKB_00349 0.45 +0.3
382,792 - OHPLBJKB_00349 0.45 -0.3
382,795 + OHPLBJKB_00349 0.45 -0.4
382,885 + OHPLBJKB_00349 0.54 -0.5
382,886 - OHPLBJKB_00349 0.54 +0.7
382,886 - OHPLBJKB_00349 0.54 -0.5
382,886 - OHPLBJKB_00349 0.54 -0.5
382,953 - OHPLBJKB_00349 0.61 +0.0
382,990 - OHPLBJKB_00349 0.64 -0.9
382,990 - OHPLBJKB_00349 0.64 +0.5
383,099 - OHPLBJKB_00349 0.75 +0.7
383,132 + OHPLBJKB_00349 0.78 -1.4
383,144 - OHPLBJKB_00349 0.79 -0.0
383,144 - OHPLBJKB_00349 0.79 -1.0
383,296 + +2.4
383,499 - -0.4
383,499 - -0.9
383,587 - OHPLBJKB_00350 0.12 +0.7
383,705 - OHPLBJKB_00350 0.18 -0.3
383,726 + OHPLBJKB_00350 0.19 +0.5
383,761 - OHPLBJKB_00350 0.21 -0.2
383,942 - OHPLBJKB_00350 0.31 -0.3
383,998 + OHPLBJKB_00350 0.34 -0.6
383,998 + OHPLBJKB_00350 0.34 -0.1
383,999 - OHPLBJKB_00350 0.34 -1.2
383,999 - OHPLBJKB_00350 0.34 -0.6
383,999 - OHPLBJKB_00350 0.34 -0.2
384,033 - OHPLBJKB_00350 0.35 -1.9
384,087 + OHPLBJKB_00350 0.38 -0.1
384,087 + OHPLBJKB_00350 0.38 -0.2
384,088 - OHPLBJKB_00350 0.38 +0.3
384,110 + OHPLBJKB_00350 0.39 -0.2
384,135 - OHPLBJKB_00350 0.41 +0.3
384,291 + OHPLBJKB_00350 0.49 -0.3
384,292 - OHPLBJKB_00350 0.49 -0.7

Or see this region's nucleotide sequence