Experiment: D-Galacturonic Acid 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04830 and HMPREF1181_RS04835 are separated by 13 nucleotides HMPREF1181_RS04835 and HMPREF1181_RS04840 are separated by 139 nucleotides
HMPREF1181_RS04830: HMPREF1181_RS04830 - aspartate 4-decarboxylase, at 226,745 to 228,364
_RS04830
HMPREF1181_RS04835: HMPREF1181_RS04835 - hypothetical protein, at 228,378 to 229,691
_RS04835
HMPREF1181_RS04840: HMPREF1181_RS04840 - sigma-54-dependent Fis family transcriptional regulator, at 229,831 to 231,189
_RS04840
Position (kb) 228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.465 kb on + strand, within HMPREF1181_RS04830 at 227.466 kb on - strand, within HMPREF1181_RS04830 at 227.482 kb on - strand, within HMPREF1181_RS04830 at 227.548 kb on + strand, within HMPREF1181_RS04830 at 227.618 kb on - strand, within HMPREF1181_RS04830 at 227.633 kb on + strand, within HMPREF1181_RS04830 at 227.634 kb on - strand, within HMPREF1181_RS04830 at 227.749 kb on - strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.763 kb on - strand, within HMPREF1181_RS04830 at 227.868 kb on + strand, within HMPREF1181_RS04830 at 227.952 kb on + strand, within HMPREF1181_RS04830 at 228.056 kb on - strand, within HMPREF1181_RS04830 at 228.056 kb on - strand, within HMPREF1181_RS04830 at 228.092 kb on - strand, within HMPREF1181_RS04830 at 228.150 kb on - strand, within HMPREF1181_RS04830 at 228.181 kb on - strand, within HMPREF1181_RS04830 at 228.290 kb on + strand at 228.291 kb on - strand at 228.418 kb on + strand at 228.419 kb on - strand at 228.419 kb on - strand at 228.419 kb on - strand at 228.527 kb on + strand, within HMPREF1181_RS04835 at 228.527 kb on + strand, within HMPREF1181_RS04835 at 228.565 kb on - strand, within HMPREF1181_RS04835 at 228.669 kb on - strand, within HMPREF1181_RS04835 at 228.669 kb on - strand, within HMPREF1181_RS04835 at 228.746 kb on + strand, within HMPREF1181_RS04835 at 228.827 kb on + strand, within HMPREF1181_RS04835 at 228.827 kb on + strand, within HMPREF1181_RS04835 at 228.978 kb on - strand, within HMPREF1181_RS04835 at 229.034 kb on - strand, within HMPREF1181_RS04835 at 229.110 kb on + strand, within HMPREF1181_RS04835 at 229.314 kb on - strand, within HMPREF1181_RS04835 at 229.444 kb on + strand, within HMPREF1181_RS04835 at 229.564 kb on - strand at 229.564 kb on - strand at 229.570 kb on - strand at 229.570 kb on - strand at 229.574 kb on + strand at 229.574 kb on + strand at 229.592 kb on - strand at 229.594 kb on - strand at 229.625 kb on - strand at 229.626 kb on + strand at 229.626 kb on + strand at 229.627 kb on - strand at 229.685 kb on + strand at 229.698 kb on + strand at 229.811 kb on - strand at 229.827 kb on - strand at 229.827 kb on - strand at 229.937 kb on - strand at 230.270 kb on - strand, within HMPREF1181_RS04840 at 230.292 kb on - strand, within HMPREF1181_RS04840 at 230.437 kb on - strand, within HMPREF1181_RS04840 at 230.551 kb on - strand, within HMPREF1181_RS04840 at 230.551 kb on - strand, within HMPREF1181_RS04840 at 230.647 kb on - strand, within HMPREF1181_RS04840 at 230.668 kb on - strand, within HMPREF1181_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid 10 mM (C) remove 227,465 + HMPREF1181_RS04830 0.44 -0.3 227,466 - HMPREF1181_RS04830 0.45 +0.0 227,482 - HMPREF1181_RS04830 0.45 -0.5 227,548 + HMPREF1181_RS04830 0.50 -2.1 227,618 - HMPREF1181_RS04830 0.54 +1.2 227,633 + HMPREF1181_RS04830 0.55 -0.5 227,634 - HMPREF1181_RS04830 0.55 -0.4 227,749 - HMPREF1181_RS04830 0.62 +0.5 227,762 + HMPREF1181_RS04830 0.63 -0.0 227,762 + HMPREF1181_RS04830 0.63 -0.4 227,762 + HMPREF1181_RS04830 0.63 +0.5 227,763 - HMPREF1181_RS04830 0.63 -0.2 227,868 + HMPREF1181_RS04830 0.69 +0.3 227,952 + HMPREF1181_RS04830 0.75 +0.9 228,056 - HMPREF1181_RS04830 0.81 -0.6 228,056 - HMPREF1181_RS04830 0.81 +0.3 228,092 - HMPREF1181_RS04830 0.83 +0.5 228,150 - HMPREF1181_RS04830 0.87 -0.5 228,181 - HMPREF1181_RS04830 0.89 +0.2 228,290 + +0.0 228,291 - +0.3 228,418 + +0.1 228,419 - +0.5 228,419 - +0.6 228,419 - +0.4 228,527 + HMPREF1181_RS04835 0.11 +0.4 228,527 + HMPREF1181_RS04835 0.11 +1.3 228,565 - HMPREF1181_RS04835 0.14 -0.2 228,669 - HMPREF1181_RS04835 0.22 -0.3 228,669 - HMPREF1181_RS04835 0.22 -0.9 228,746 + HMPREF1181_RS04835 0.28 +0.3 228,827 + HMPREF1181_RS04835 0.34 +0.6 228,827 + HMPREF1181_RS04835 0.34 -0.7 228,978 - HMPREF1181_RS04835 0.46 -0.9 229,034 - HMPREF1181_RS04835 0.50 +0.4 229,110 + HMPREF1181_RS04835 0.56 +0.7 229,314 - HMPREF1181_RS04835 0.71 -2.9 229,444 + HMPREF1181_RS04835 0.81 +0.3 229,564 - +0.1 229,564 - +0.6 229,570 - +0.8 229,570 - +0.2 229,574 + -0.4 229,574 + -0.2 229,592 - +0.8 229,594 - -1.5 229,625 - -0.4 229,626 + -0.4 229,626 + -0.0 229,627 - +0.2 229,685 + -0.1 229,698 + -1.1 229,811 - +0.5 229,827 - -0.2 229,827 - -0.1 229,937 - -0.0 230,270 - HMPREF1181_RS04840 0.32 -0.7 230,292 - HMPREF1181_RS04840 0.34 +0.2 230,437 - HMPREF1181_RS04840 0.45 -0.0 230,551 - HMPREF1181_RS04840 0.53 -1.1 230,551 - HMPREF1181_RS04840 0.53 -0.9 230,647 - HMPREF1181_RS04840 0.60 +0.4 230,668 - HMPREF1181_RS04840 0.62 -0.3
Or see this region's nucleotide sequence