Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF993 and GFF994 overlap by 4 nucleotides GFF994 and GFF995 are separated by 14 nucleotides GFF995 and GFF996 are separated by 8 nucleotides GFF996 and GFF997 are separated by 130 nucleotides
GFF993 - Transglutaminase-like domain, at 732,150 to 732,845
GFF993
GFF994 - probable hydrolase, at 732,842 to 733,708
GFF994
GFF995 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 733,723 to 735,237
GFF995
GFF996 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 735,246 to 736,055
GFF996
GFF997 - MaoC-related acyl dehydratase, at 736,186 to 736,668
GFF997
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -1
0
1 at 733.232 kb on + strand, within GFF994 at 733.315 kb on + strand, within GFF994 at 733.316 kb on - strand, within GFF994 at 733.317 kb on - strand, within GFF994 at 733.777 kb on + strand at 733.778 kb on - strand at 733.831 kb on + strand at 733.927 kb on + strand, within GFF995 at 733.928 kb on - strand, within GFF995 at 733.928 kb on - strand, within GFF995 at 734.012 kb on - strand, within GFF995 at 734.104 kb on + strand, within GFF995 at 734.633 kb on - strand, within GFF995 at 734.809 kb on + strand, within GFF995 at 735.136 kb on + strand at 735.165 kb on - strand at 735.460 kb on + strand, within GFF996 at 735.461 kb on - strand, within GFF996 at 735.662 kb on - strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.692 kb on - strand, within GFF996 at 735.872 kb on - strand, within GFF996 at 736.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 733,232 + GFF994 0.45 +0.3 733,315 + GFF994 0.55 +0.1 733,316 - GFF994 0.55 -0.7 733,317 - GFF994 0.55 -0.5 733,777 + +0.3 733,778 - -0.7 733,831 + +0.0 733,927 + GFF995 0.13 -0.1 733,928 - GFF995 0.14 -0.8 733,928 - GFF995 0.14 +1.1 734,012 - GFF995 0.19 -0.7 734,104 + GFF995 0.25 -0.1 734,633 - GFF995 0.60 -0.5 734,809 + GFF995 0.72 -0.4 735,136 + -0.3 735,165 - -0.0 735,460 + GFF996 0.26 +1.3 735,461 - GFF996 0.27 +0.2 735,662 - GFF996 0.51 -0.1 735,691 + GFF996 0.55 +0.2 735,691 + GFF996 0.55 +0.7 735,691 + GFF996 0.55 -0.5 735,692 - GFF996 0.55 -0.4 735,872 - GFF996 0.77 -1.1 736,078 - -1.1
Or see this region's nucleotide sequence