Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF978 and GFF979 overlap by 4 nucleotides GFF979 and GFF980 are separated by 40 nucleotides GFF980 and GFF981 are separated by 66 nucleotides
GFF978 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 716,378 to 717,544
GFF978
GFF979 - Enoyl-CoA hydratase (EC 4.2.1.17), at 717,541 to 718,329
GFF979
GFF980 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 718,370 to 719,977
GFF980
GFF981 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 720,044 to 722,041
GFF981
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 717.600 kb on - strand at 717.751 kb on + strand, within GFF979 at 717.802 kb on + strand, within GFF979 at 717.802 kb on + strand, within GFF979 at 717.803 kb on - strand, within GFF979 at 717.803 kb on - strand, within GFF979 at 717.803 kb on - strand, within GFF979 at 717.803 kb on - strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.090 kb on + strand, within GFF979 at 718.091 kb on - strand, within GFF979 at 718.091 kb on - strand, within GFF979 at 718.091 kb on - strand, within GFF979 at 718.091 kb on - strand, within GFF979 at 718.091 kb on - strand, within GFF979 at 718.132 kb on + strand, within GFF979 at 718.308 kb on + strand at 718.309 kb on - strand at 718.309 kb on - strand at 718.355 kb on + strand at 718.356 kb on - strand at 718.369 kb on + strand at 718.369 kb on + strand at 718.369 kb on + strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.370 kb on - strand at 718.371 kb on - strand at 718.393 kb on - strand at 718.393 kb on - strand at 718.396 kb on + strand at 718.434 kb on - strand at 718.581 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.613 kb on + strand, within GFF980 at 718.719 kb on - strand, within GFF980 at 718.721 kb on + strand, within GFF980 at 718.721 kb on + strand, within GFF980 at 718.881 kb on + strand, within GFF980 at 718.881 kb on + strand, within GFF980 at 718.882 kb on - strand, within GFF980 at 718.882 kb on - strand, within GFF980 at 718.882 kb on - strand, within GFF980 at 718.949 kb on + strand, within GFF980 at 718.949 kb on + strand, within GFF980 at 718.950 kb on - strand, within GFF980 at 718.950 kb on - strand, within GFF980 at 718.997 kb on + strand, within GFF980 at 718.997 kb on + strand, within GFF980 at 718.998 kb on - strand, within GFF980 at 718.998 kb on - strand, within GFF980 at 718.999 kb on + strand, within GFF980 at 718.999 kb on + strand, within GFF980 at 718.999 kb on + strand, within GFF980 at 718.999 kb on + strand, within GFF980 at 718.999 kb on + strand, within GFF980 at 719.000 kb on - strand, within GFF980 at 719.000 kb on - strand, within GFF980 at 719.000 kb on - strand, within GFF980 at 719.000 kb on - strand, within GFF980 at 719.003 kb on + strand, within GFF980 at 719.003 kb on + strand, within GFF980 at 719.003 kb on + strand, within GFF980 at 719.004 kb on - strand, within GFF980 at 719.110 kb on + strand, within GFF980 at 719.110 kb on + strand, within GFF980 at 719.110 kb on + strand, within GFF980 at 719.237 kb on + strand, within GFF980 at 719.237 kb on + strand, within GFF980 at 719.238 kb on - strand, within GFF980 at 719.594 kb on + strand, within GFF980 at 719.594 kb on + strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.595 kb on - strand, within GFF980 at 719.619 kb on - strand, within GFF980 at 719.619 kb on - strand, within GFF980 at 719.630 kb on + strand, within GFF980 at 720.049 kb on + strand at 720.493 kb on + strand, within GFF981 at 720.805 kb on + strand, within GFF981 at 720.845 kb on + strand, within GFF981 at 720.890 kb on + strand, within GFF981 at 720.891 kb on - strand, within GFF981
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 717,600 - +0.3 717,751 + GFF979 0.27 -0.1 717,802 + GFF979 0.33 +0.5 717,802 + GFF979 0.33 +1.0 717,803 - GFF979 0.33 -0.1 717,803 - GFF979 0.33 +0.3 717,803 - GFF979 0.33 +0.4 717,803 - GFF979 0.33 +1.9 718,090 + GFF979 0.70 -0.2 718,090 + GFF979 0.70 -0.3 718,090 + GFF979 0.70 -0.4 718,090 + GFF979 0.70 +0.1 718,090 + GFF979 0.70 -0.3 718,090 + GFF979 0.70 -0.0 718,091 - GFF979 0.70 +0.2 718,091 - GFF979 0.70 -0.1 718,091 - GFF979 0.70 +0.0 718,091 - GFF979 0.70 -0.3 718,091 - GFF979 0.70 +0.0 718,132 + GFF979 0.75 +0.1 718,308 + +0.3 718,309 - -0.9 718,309 - -0.2 718,355 + +0.3 718,356 - -0.9 718,369 + +0.3 718,369 + +0.1 718,369 + -0.5 718,370 - -0.7 718,370 - -0.3 718,370 - -0.5 718,370 - +0.1 718,370 - -0.1 718,370 - -0.1 718,370 - +0.3 718,371 - -0.1 718,393 - +1.1 718,393 - -2.1 718,396 + -0.1 718,434 - -0.4 718,581 + GFF980 0.13 +1.3 718,613 + GFF980 0.15 +0.1 718,613 + GFF980 0.15 -0.1 718,613 + GFF980 0.15 +0.3 718,613 + GFF980 0.15 +0.4 718,613 + GFF980 0.15 -0.4 718,613 + GFF980 0.15 -0.2 718,719 - GFF980 0.22 +0.7 718,721 + GFF980 0.22 +0.1 718,721 + GFF980 0.22 +0.7 718,881 + GFF980 0.32 -0.0 718,881 + GFF980 0.32 -0.1 718,882 - GFF980 0.32 -0.4 718,882 - GFF980 0.32 -0.2 718,882 - GFF980 0.32 +0.1 718,949 + GFF980 0.36 +0.0 718,949 + GFF980 0.36 -1.2 718,950 - GFF980 0.36 -0.2 718,950 - GFF980 0.36 -0.7 718,997 + GFF980 0.39 -0.1 718,997 + GFF980 0.39 -0.9 718,998 - GFF980 0.39 -0.7 718,998 - GFF980 0.39 +0.0 718,999 + GFF980 0.39 +0.9 718,999 + GFF980 0.39 -0.9 718,999 + GFF980 0.39 -0.2 718,999 + GFF980 0.39 +0.1 718,999 + GFF980 0.39 +0.5 719,000 - GFF980 0.39 +0.1 719,000 - GFF980 0.39 -0.1 719,000 - GFF980 0.39 +0.4 719,000 - GFF980 0.39 -0.7 719,003 + GFF980 0.39 +0.1 719,003 + GFF980 0.39 -0.3 719,003 + GFF980 0.39 +0.2 719,004 - GFF980 0.39 +0.3 719,110 + GFF980 0.46 +0.1 719,110 + GFF980 0.46 -0.5 719,110 + GFF980 0.46 -1.3 719,237 + GFF980 0.54 -0.5 719,237 + GFF980 0.54 -0.1 719,238 - GFF980 0.54 -1.1 719,594 + GFF980 0.76 -0.1 719,594 + GFF980 0.76 +0.2 719,595 - GFF980 0.76 +0.1 719,595 - GFF980 0.76 -1.1 719,595 - GFF980 0.76 +0.0 719,595 - GFF980 0.76 -1.1 719,619 - GFF980 0.78 -0.3 719,619 - GFF980 0.78 +1.4 719,630 + GFF980 0.78 -0.9 720,049 + -0.4 720,493 + GFF981 0.22 +1.2 720,805 + GFF981 0.38 +0.1 720,845 + GFF981 0.40 +0.3 720,890 + GFF981 0.42 -0.5 720,891 - GFF981 0.42 -0.1
Or see this region's nucleotide sequence