Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF680 and GFF681 are separated by 69 nucleotides GFF681 and GFF682 are separated by 57 nucleotides GFF682 and GFF683 are separated by 18 nucleotides GFF683 and GFF684 are separated by 145 nucleotides GFF684 and GFF685 are separated by 11 nucleotides
GFF680 - FIG00761799: membrane protein, at 364,139 to 364,960
GFF680
GFF681 - Chromosome partitioning protein ParA, at 365,030 to 365,647
GFF681
GFF682 - Acyl dehydratase, at 365,705 to 366,169
GFF682
GFF683 - hypothetical protein, at 366,188 to 366,523
GFF683
GFF684 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 366,669 to 367,142
GFF684
GFF685 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 367,154 to 367,879
GFF685
Position (kb) 365
366
367 Strain fitness (log2 ratio) -1
0
1
2 at 364.766 kb on + strand, within GFF680 at 364.767 kb on - strand, within GFF680 at 364.767 kb on - strand, within GFF680 at 364.856 kb on + strand, within GFF680 at 364.857 kb on - strand, within GFF680 at 364.889 kb on + strand at 364.889 kb on + strand at 364.890 kb on - strand at 364.901 kb on + strand at 364.958 kb on + strand at 364.958 kb on + strand at 364.958 kb on + strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.969 kb on - strand at 364.969 kb on - strand at 364.973 kb on + strand at 365.102 kb on + strand, within GFF681 at 365.102 kb on + strand, within GFF681 at 365.359 kb on - strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.978 kb on + strand, within GFF682 at 365.978 kb on + strand, within GFF682 at 365.978 kb on + strand, within GFF682 at 365.979 kb on - strand, within GFF682 at 366.190 kb on - strand at 366.301 kb on - strand, within GFF683 at 366.301 kb on - strand, within GFF683 at 366.610 kb on + strand at 366.610 kb on + strand at 366.610 kb on + strand at 366.610 kb on + strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.611 kb on - strand at 366.983 kb on - strand, within GFF684
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 364,766 + GFF680 0.76 -0.5 364,767 - GFF680 0.76 +0.4 364,767 - GFF680 0.76 -0.3 364,856 + GFF680 0.87 -0.5 364,857 - GFF680 0.87 +0.2 364,889 + -0.1 364,889 + +0.7 364,890 - -0.2 364,901 + +0.2 364,958 + -1.1 364,958 + +0.2 364,958 + +0.5 364,959 - -0.4 364,959 - +0.3 364,959 - -0.0 364,959 - +0.0 364,959 - +0.7 364,959 - +0.6 364,959 - -0.1 364,969 - -0.1 364,969 - -0.2 364,973 + +0.7 365,102 + GFF681 0.12 +0.1 365,102 + GFF681 0.12 -1.1 365,359 - GFF681 0.53 -0.2 365,366 + GFF681 0.54 -0.9 365,366 + GFF681 0.54 +0.3 365,366 + GFF681 0.54 +0.6 365,366 + GFF681 0.54 -0.4 365,366 + GFF681 0.54 -0.2 365,366 + GFF681 0.54 -0.3 365,367 - GFF681 0.55 +0.1 365,367 - GFF681 0.55 -0.0 365,367 - GFF681 0.55 -0.5 365,367 - GFF681 0.55 +0.2 365,367 - GFF681 0.55 +0.4 365,540 + GFF681 0.83 -0.5 365,540 + GFF681 0.83 +0.4 365,540 + GFF681 0.83 +0.3 365,540 + GFF681 0.83 +0.7 365,540 + GFF681 0.83 +0.5 365,541 - GFF681 0.83 +1.9 365,541 - GFF681 0.83 -1.5 365,541 - GFF681 0.83 +0.3 365,541 - GFF681 0.83 +0.2 365,541 - GFF681 0.83 -0.7 365,541 - GFF681 0.83 +0.6 365,978 + GFF682 0.59 -0.2 365,978 + GFF682 0.59 -0.1 365,978 + GFF682 0.59 -0.2 365,979 - GFF682 0.59 +0.2 366,190 - +0.0 366,301 - GFF683 0.34 +0.6 366,301 - GFF683 0.34 -0.1 366,610 + -0.2 366,610 + +0.2 366,610 + +1.4 366,610 + +0.2 366,611 - +0.1 366,611 - -0.4 366,611 - +0.6 366,611 - -0.1 366,611 - +0.3 366,611 - -0.6 366,611 - +0.1 366,611 - +1.5 366,983 - GFF684 0.66 +0.3
Or see this region's nucleotide sequence