Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF587 and GFF588 overlap by 11 nucleotides GFF588 and GFF589 are separated by 67 nucleotides GFF589 and GFF590 are separated by 15 nucleotides GFF590 and GFF591 are separated by 69 nucleotides
GFF587 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 258,495 to 259,844
GFF587
GFF588 - Ribosomal protein L11 methyltransferase (EC 2.1.1.-), at 259,834 to 260,763
GFF588
GFF589 - Probable transmembrane protein, at 260,831 to 261,952
GFF589
GFF590 - Sugar kinases, ribokinase family, at 261,968 to 262,852
GFF590
GFF591 - Low-complexity acidic protein, XCC2875 type, at 262,922 to 263,452
GFF591
Position (kb) 260
261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 260.386 kb on + strand, within GFF588 at 260.386 kb on + strand, within GFF588 at 260.387 kb on - strand, within GFF588 at 260.387 kb on - strand, within GFF588 at 260.387 kb on - strand, within GFF588 at 260.689 kb on + strand at 260.689 kb on + strand at 260.689 kb on + strand at 260.690 kb on - strand at 260.918 kb on + strand at 260.918 kb on + strand at 260.919 kb on - strand at 260.919 kb on - strand at 261.708 kb on - strand, within GFF589 at 262.197 kb on - strand, within GFF590 at 262.197 kb on - strand, within GFF590 at 262.259 kb on + strand, within GFF590 at 262.259 kb on + strand, within GFF590 at 262.259 kb on + strand, within GFF590 at 262.259 kb on + strand, within GFF590 at 262.260 kb on - strand, within GFF590 at 262.260 kb on - strand, within GFF590 at 262.260 kb on - strand, within GFF590 at 262.842 kb on - strand at 262.842 kb on - strand at 262.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 260,386 + GFF588 0.59 -0.5 260,386 + GFF588 0.59 -0.6 260,387 - GFF588 0.59 -0.2 260,387 - GFF588 0.59 -0.5 260,387 - GFF588 0.59 -0.2 260,689 + -1.4 260,689 + -0.0 260,689 + -0.7 260,690 - -0.2 260,918 + -0.7 260,918 + -2.1 260,919 - -1.3 260,919 - -3.2 261,708 - GFF589 0.78 -1.0 262,197 - GFF590 0.26 +0.9 262,197 - GFF590 0.26 -1.9 262,259 + GFF590 0.33 -2.7 262,259 + GFF590 0.33 -1.9 262,259 + GFF590 0.33 -1.7 262,259 + GFF590 0.33 -1.9 262,260 - GFF590 0.33 -3.1 262,260 - GFF590 0.33 -1.1 262,260 - GFF590 0.33 -0.7 262,842 - -1.1 262,842 - -1.4 262,842 - -1.9
Or see this region's nucleotide sequence