Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5585

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5584 and GFF5585 are separated by 121 nucleotidesGFF5585 and GFF5586 are separated by 12 nucleotides GFF5584 - DNA polymerase I (EC 2.7.7.7), at 2,597,003 to 2,599,795 GFF5584 GFF5585 - hypothetical protein, at 2,599,917 to 2,600,243 GFF5585 GFF5586 - Homoserine kinase (EC 2.7.1.39), at 2,600,256 to 2,601,263 GFF5586 Position (kb) 2599 2600 2601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2598.967 kb on - strand, within GFF5584at 2599.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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2,598,967 - GFF5584 0.70 -3.9
2,599,906 - -1.0

Or see this region's nucleotide sequence