Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5565

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
2,575,635	+		GFF5562	0.89	+0.0
2,575,636	-		GFF5562	0.89	+0.6
2,575,636	-		GFF5562	0.89	+1.0
2,575,653	+				-0.7
2,575,653	+				+0.5
2,575,653	+				+0.0
2,575,654	-				+0.0
2,575,654	-				-0.1
2,575,654	-				+0.1
2,575,668	+				-0.2
2,575,668	+				+0.3
2,575,838	+		GFF5563	0.56	+0.1
2,575,839	-		GFF5563	0.57	+0.7
2,576,158	+		GFF5564	0.48	+0.6
2,576,158	+		GFF5564	0.48	-0.9
2,576,159	-		GFF5564	0.48	+0.0
2,576,159	-		GFF5564	0.48	+0.2
2,576,159	-		GFF5564	0.48	-0.2
2,576,221	+		GFF5564	0.59	-0.1
2,576,221	+		GFF5564	0.59	+0.5
2,576,222	-		GFF5564	0.59	+0.4
2,576,332	+		GFF5564	0.79	-0.7
2,576,333	-		GFF5564	0.79	+0.1
2,576,446	+				+0.1
2,576,446	+				+0.1
2,576,446	+				+1.0
2,576,446	+				-0.4
2,576,447	-				-0.3
2,576,447	-				+1.2
2,576,447	-				-0.1
2,576,510	+				-0.7
2,576,523	+				-3.3
2,576,523	+				-0.7
2,577,462	+				-0.7
2,577,462	+				-1.7
2,577,663	+		GFF5566	0.17	-2.1
2,577,981	+		GFF5566	0.45	-2.7
2,578,369	-		GFF5566	0.80	-3.0