Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5549

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
2,555,636	+		GFF5548	0.50	+0.0
2,555,636	+		GFF5548	0.50	-0.4
2,555,636	+		GFF5548	0.50	+0.6
2,555,636	+		GFF5548	0.50	-1.1
2,555,636	+		GFF5548	0.50	-0.7
2,555,636	+		GFF5548	0.50	+0.4
2,555,637	-		GFF5548	0.51	-0.6
2,555,637	-		GFF5548	0.51	+0.4
2,555,637	-		GFF5548	0.51	-0.0
2,555,637	-		GFF5548	0.51	+0.6
2,555,637	-		GFF5548	0.51	-0.0
2,555,637	-		GFF5548	0.51	+1.4
2,555,637	-		GFF5548	0.51	-0.2
2,555,637	-		GFF5548	0.51	-0.6
2,555,851	+		GFF5548	0.81	-0.6
2,555,851	+		GFF5548	0.81	+0.8
2,555,851	+		GFF5548	0.81	-0.8
2,555,852	-		GFF5548	0.81	-0.4
2,555,852	-		GFF5548	0.81	-0.6
2,555,852	-		GFF5548	0.81	-1.2
2,555,852	-		GFF5548	0.81	-1.0
2,555,987	+				-0.2
2,555,987	+				+0.1
2,555,987	+				+1.2
2,555,988	-				+0.1
2,555,996	+				-0.3
2,555,996	+				+0.1
2,555,996	+				+0.5
2,555,996	+				-0.6
2,555,996	+				+0.2
2,555,996	+				+0.1
2,555,996	+				+0.3
2,555,996	+				+1.0
2,555,996	+				-0.4
2,555,996	+				-0.3
2,555,996	+				+0.7
2,555,996	+				-0.2
2,555,997	-				-0.5
2,555,997	-				-0.4
2,555,997	-				-1.3
2,555,997	-				+0.4
2,555,997	-				-0.0
2,555,997	-				+0.1
2,555,997	-				+0.2
2,555,997	-				-0.1
2,555,997	-				-0.2
2,555,997	-				-0.5
2,555,997	-				+0.8
2,555,997	-				-0.4
2,555,997	-				+0.7
2,555,997	-				-0.0
2,555,997	-				+0.6
2,555,998	+				+0.1
2,555,998	+				-0.7
2,555,998	+				-0.2
2,555,998	+				+0.3
2,555,998	+				-0.2
2,555,998	+				-1.5
2,555,998	+				+0.1
2,555,998	+				+0.2
2,555,998	+				-0.5
2,555,998	+				+0.1
2,555,999	-				-0.2
2,555,999	-				+0.3
2,555,999	-				+1.4
2,555,999	-				-0.0
2,555,999	-				-0.2
2,555,999	-				+0.3
2,556,004	-				-0.4
2,556,004	-				-0.3
2,556,004	-				-0.7
2,556,040	+				+0.5
2,556,040	+				+0.8
2,556,114	+				-0.6
2,556,114	+				-0.3
2,556,115	-				-0.8
2,556,148	+				-1.0
2,556,151	+				+0.0
2,556,152	-				-0.4
2,556,172	+				+0.8
2,556,173	-				+0.1
2,556,173	-				+1.2
2,556,197	+				-0.3
2,556,198	-				+0.7
2,556,198	-				+0.2
2,556,232	+				+0.2
2,556,232	+				+0.2
2,556,232	+				+1.0
2,556,233	-				+0.4
2,556,233	-				+0.4
2,556,233	-				+1.1
2,556,233	-				+0.3
2,556,233	-				-2.0
2,556,233	-				-0.5
2,556,233	-				-1.9
2,556,239	+				-0.9
2,556,239	+				+0.0
2,556,239	+				+0.2
2,556,239	+				-1.2
2,556,240	-				-0.1
2,556,240	-				+0.8
2,556,240	-				+0.6
2,556,240	-				+0.3
2,556,240	-				-0.0
2,556,240	-				-1.2
2,556,240	-				+0.5
2,556,240	-				+0.1
2,556,288	+				-0.2
2,556,288	+				-0.2
2,556,288	+				+0.4
2,556,288	+				-0.3
2,556,288	+				+0.6
2,556,288	+				+0.9
2,556,289	-				-0.1
2,556,289	-				-0.2
2,556,289	-				+0.3
2,556,506	+				+0.0
2,556,506	+				-0.4
2,556,506	+				+0.4
2,556,506	+				-0.6
2,556,506	+				-0.3
2,556,506	+				+0.5
2,556,506	+				+0.7
2,556,506	+				-0.1
2,556,507	-				+0.2
2,556,507	-				-0.6
2,556,585	+				+1.1
2,556,585	+				-0.7
2,556,586	-				-0.7
2,556,586	-				+0.8
2,556,597	+				-0.8
2,556,597	+				-0.1
2,556,598	-				-0.1
2,556,598	-				-1.1
2,556,598	-				-0.7
2,556,598	-				+0.4
2,556,598	-				-0.4
2,556,781	+		GFF5549	0.34	-1.4
2,556,781	+		GFF5549	0.34	-0.2
2,556,781	+		GFF5549	0.34	-0.7
2,556,781	+		GFF5549	0.34	-2.3
2,556,782	-		GFF5549	0.34	-0.1
2,556,782	-		GFF5549	0.34	-0.7
2,556,916	+		GFF5549	0.66	+0.1
2,556,917	-		GFF5549	0.66	-2.1
2,556,926	+		GFF5549	0.68	+0.3
2,556,926	+		GFF5549	0.68	+1.2
2,556,926	+		GFF5549	0.68	-1.8
2,556,926	+		GFF5549	0.68	-0.5
2,556,927	-		GFF5549	0.68	-1.5
2,556,927	-		GFF5549	0.68	-0.4
2,556,927	-		GFF5549	0.68	-0.7
2,556,927	-		GFF5549	0.68	-0.1
2,556,927	-		GFF5549	0.68	-0.4
2,556,927	-		GFF5549	0.68	-0.4
2,556,997	+		GFF5549	0.84	+0.4
2,556,997	+		GFF5549	0.84	-0.1
2,556,997	+		GFF5549	0.84	-0.3
2,556,998	-		GFF5549	0.84	+1.0
2,556,998	-		GFF5549	0.84	+0.2
2,556,998	-		GFF5549	0.84	-0.7
2,556,998	-		GFF5549	0.84	+0.1
2,556,998	-		GFF5549	0.84	+0.3
2,557,084	+				+1.0
2,557,084	+				-0.5
2,557,098	+				+1.0
2,557,098	+				+0.5
2,557,100	+				-0.2
2,557,106	-				-0.0
2,557,110	-				-1.5
2,557,110	-				-0.1
2,557,113	+				+0.3
2,557,113	+				-1.1
2,557,113	+				-0.6
2,557,114	-				+0.4
2,557,114	-				-0.1
2,557,118	+				-0.1
2,557,118	+				-0.7
2,557,119	-				+0.1
2,557,121	-				-0.4
2,557,130	+				+0.1
2,557,130	+				+0.7
2,557,130	+				-0.1
2,557,130	+				+0.9
2,557,131	-				+0.4
2,557,131	-				-0.9
2,557,131	-				+0.0
2,557,131	-				-0.3
2,557,131	-				+0.4
2,557,131	-				-0.3
2,557,131	-				+0.1
2,557,131	-				+0.1
2,557,131	-				-0.1
2,557,131	-				+0.3
2,557,131	-				+0.5
2,557,131	-				-0.7
2,557,143	+				-0.6
2,557,143	+				+0.5
2,557,143	+				-0.7
2,557,144	-				+0.9
2,557,144	-				+0.4
2,557,144	-				+0.5
2,557,144	-				-0.5
2,557,144	-				-0.3
2,557,257	-				-0.3
2,557,309	+		GFF5550	0.39	-0.1
2,557,309	+		GFF5550	0.39	-0.1
2,557,309	+		GFF5550	0.39	-0.2
2,557,310	-		GFF5550	0.40	+0.9
2,557,310	-		GFF5550	0.40	+0.0
2,557,310	-		GFF5550	0.40	+0.2
2,557,375	+				+0.1
2,557,424	+				+0.0
2,557,424	+				+0.4
2,557,424	+				+0.0
2,557,425	-				-0.2
2,557,425	-				-0.8
2,557,425	-				+0.9
2,557,425	-				+0.0
2,557,425	-				+1.3
2,557,535	+				+0.5
2,557,536	-				+0.4
2,557,574	-				-0.0
2,557,614	+				+0.0
2,557,614	+				-0.5
2,557,614	+				+0.9
2,557,615	-				-0.0
2,557,615	-				+0.6
2,557,615	-				+0.5
2,557,617	+				+0.2
2,557,618	-				-0.0
2,557,618	-				-1.1
2,557,634	+				-0.1
2,557,634	+				+0.5
2,557,634	+				+0.6
2,557,634	+				-0.4
2,557,635	-				+0.4
2,557,635	-				-0.4
2,557,635	-				+0.0
2,557,635	-				-0.2
2,557,658	+				-0.5
2,557,658	+				+0.3
2,557,667	+				-0.1
2,557,667	+				+0.0
2,557,667	+				-0.6
2,557,668	-				+0.9
2,557,668	-				+0.4
2,557,668	-				+0.5
2,557,668	-				+0.2
2,557,668	-				-0.0
2,557,699	+				+0.3
2,557,755	+				-0.1
2,557,755	+				-0.7
2,557,756	-				-1.7
2,557,756	-				-0.8
2,557,768	+				-0.2
2,557,771	+				-0.1
2,557,771	+				-0.8
2,557,771	+				+0.6
2,557,771	+				+0.9
2,557,771	+				-0.0
2,557,772	-				+0.1
2,557,772	-				-1.4
2,557,788	+				-0.1
2,557,788	+				-0.1
2,557,788	+				+0.7
2,557,788	+				+0.5
2,557,789	-				-0.6
2,557,789	-				+0.4
2,557,789	-				-0.4
2,557,789	-				+0.1
2,557,789	-				-1.5
2,557,789	-				+0.2
2,557,861	+				+0.1
2,557,862	-				+1.3
2,557,878	+				+0.3
2,557,879	-				-1.1
2,557,879	-				+0.1
2,557,892	+				+0.9
2,557,893	-				-1.2
2,557,909	+				+0.9
2,557,909	+				+0.1
2,557,909	+				+0.2
2,557,909	+				+0.0
2,557,909	+				-0.7
2,557,909	+				-1.0
2,557,910	-				-0.0
2,557,910	-				-1.4
2,557,936	+				-0.4
2,557,936	+				-0.3
2,557,936	+				+1.3
2,557,937	-				-0.1