Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF551 and GFF552 are separated by 97 nucleotides GFF552 and GFF553 overlap by 1 nucleotides
GFF551 - FIG00931886: hypothetical protein, at 219,412 to 221,289
GFF551
GFF552 - ATP-dependent protease HslV (EC 3.4.25.-), at 221,387 to 221,932
GFF552
GFF553 - ATP-dependent hsl protease ATP-binding subunit HslU, at 221,932 to 223,266
GFF553
Position (kb) 221
222 Strain fitness (log2 ratio) -1
0
1 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.424 kb on - strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.465 kb on + strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.466 kb on - strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.834 kb on + strand, within GFF551 at 220.835 kb on - strand, within GFF551 at 220.835 kb on - strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.873 kb on + strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.874 kb on - strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.876 kb on + strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 220.877 kb on - strand, within GFF551 at 221.261 kb on - strand at 221.261 kb on - strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.320 kb on + strand at 221.798 kb on + strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.799 kb on - strand, within GFF552 at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.897 kb on + strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 221.898 kb on - strand at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.202 kb on + strand, within GFF553 at 222.203 kb on - strand, within GFF553 at 222.203 kb on - strand, within GFF553 at 222.814 kb on + strand, within GFF553 at 222.814 kb on + strand, within GFF553 at 222.815 kb on - strand, within GFF553
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 220,424 - GFF551 0.54 +0.2 220,424 - GFF551 0.54 +0.4 220,424 - GFF551 0.54 +0.5 220,424 - GFF551 0.54 -0.3 220,465 + GFF551 0.56 -0.1 220,465 + GFF551 0.56 +0.9 220,465 + GFF551 0.56 +0.5 220,465 + GFF551 0.56 -0.1 220,466 - GFF551 0.56 -0.2 220,466 - GFF551 0.56 +0.5 220,466 - GFF551 0.56 -0.4 220,466 - GFF551 0.56 +0.9 220,466 - GFF551 0.56 +0.9 220,466 - GFF551 0.56 -0.7 220,466 - GFF551 0.56 -0.1 220,466 - GFF551 0.56 -1.1 220,834 + GFF551 0.76 -0.2 220,834 + GFF551 0.76 +0.5 220,834 + GFF551 0.76 -0.7 220,834 + GFF551 0.76 -0.0 220,835 - GFF551 0.76 -0.1 220,835 - GFF551 0.76 +0.3 220,873 + GFF551 0.78 -1.1 220,873 + GFF551 0.78 -0.5 220,873 + GFF551 0.78 +0.3 220,873 + GFF551 0.78 +0.5 220,874 - GFF551 0.78 +0.8 220,874 - GFF551 0.78 -1.1 220,874 - GFF551 0.78 +1.3 220,876 + GFF551 0.78 -0.0 220,876 + GFF551 0.78 +0.6 220,876 + GFF551 0.78 +0.4 220,877 - GFF551 0.78 +0.7 220,877 - GFF551 0.78 -0.1 220,877 - GFF551 0.78 +0.6 220,877 - GFF551 0.78 +1.1 221,261 - +0.6 221,261 - +0.2 221,320 + -0.2 221,320 + +0.1 221,320 + -0.2 221,798 + GFF552 0.75 +0.1 221,799 - GFF552 0.75 +0.3 221,799 - GFF552 0.75 -0.5 221,897 + +0.8 221,897 + -0.9 221,897 + -0.1 221,897 + +1.2 221,898 - -0.0 221,898 - +0.3 221,898 - +0.5 221,898 - +0.3 221,898 - -0.4 221,898 - -0.4 221,898 - -0.7 222,202 + GFF553 0.20 -0.5 222,202 + GFF553 0.20 +0.6 222,202 + GFF553 0.20 -0.2 222,203 - GFF553 0.20 -0.1 222,203 - GFF553 0.20 -0.4 222,814 + GFF553 0.66 +0.3 222,814 + GFF553 0.66 -0.2 222,815 - GFF553 0.66 -1.2
Or see this region's nucleotide sequence