Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5437

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
2,439,604	+		GFF5436	0.67	-0.5
2,439,605	-		GFF5436	0.67	+0.8
2,439,605	-		GFF5436	0.67	-0.2
2,439,848	+				+0.0
2,439,848	+				+0.1
2,439,849	-				-1.1
2,439,864	+				+0.1
2,439,864	+				-0.7
2,439,865	-				-0.8
2,439,865	-				-0.3
2,439,889	+				+0.0
2,439,889	+				+0.2
2,439,893	+				+0.8
2,439,894	-				-0.5
2,439,921	-				+0.4
2,439,921	-				+1.4
2,439,921	-				-0.3
2,439,921	-				-0.7
2,439,992	+				+1.8
2,439,993	-				+0.3
2,440,368	-		GFF5437	0.37	+0.3
2,440,368	-		GFF5437	0.37	+0.8
2,440,928	+		GFF5437	0.85	+0.8
2,440,928	+		GFF5437	0.85	-0.5
2,440,928	+		GFF5437	0.85	+0.4
2,440,928	+		GFF5437	0.85	+0.6
2,441,037	-				-0.6
2,441,277	+		GFF5438	0.31	-0.1
2,441,687	-				+0.1
2,441,687	-				-0.3