Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5417

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5416 and GFF5417 overlap by 4 nucleotidesGFF5417 and GFF5418 are separated by 23 nucleotidesGFF5418 and GFF5419 overlap by 19 nucleotides GFF5416 - SoxH protein, homolog, at 2,418,152 to 2,419,090 GFF5416 GFF5417 - FIG00956261: hypothetical protein, at 2,419,087 to 2,419,851 GFF5417 GFF5418 - ABC transporter permease protein, at 2,419,875 to 2,420,717 GFF5418 GFF5419 - FIG01198295: hypothetical protein, at 2,420,699 to 2,421,883 GFF5419 Position (kb) 2419 2420Strain fitness (log2 ratio) -1 0 1at 2419.450 kb on + strand, within GFF5417at 2420.176 kb on + strand, within GFF5418at 2420.413 kb on + strand, within GFF5418at 2420.413 kb on + strand, within GFF5418at 2420.414 kb on - strand, within GFF5418at 2420.414 kb on - strand, within GFF5418at 2420.482 kb on + strand, within GFF5418at 2420.482 kb on + strand, within GFF5418at 2420.491 kb on + strand, within GFF5418at 2420.500 kb on + strand, within GFF5418

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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2,419,450 + GFF5417 0.47 +0.5
2,420,176 + GFF5418 0.36 +0.8
2,420,413 + GFF5418 0.64 -0.8
2,420,413 + GFF5418 0.64 -0.0
2,420,414 - GFF5418 0.64 -0.9
2,420,414 - GFF5418 0.64 -0.6
2,420,482 + GFF5418 0.72 +0.4
2,420,482 + GFF5418 0.72 +0.3
2,420,491 + GFF5418 0.73 +0.3
2,420,500 + GFF5418 0.74 +0.2

Or see this region's nucleotide sequence