Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5158

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
2,170,446	+		GFF5156	0.67	-0.0
2,170,446	+		GFF5156	0.67	+0.7
2,170,446	+		GFF5156	0.67	+0.3
2,170,447	-		GFF5156	0.67	-1.3
2,170,447	-		GFF5156	0.67	+0.4
2,170,447	-		GFF5156	0.67	-0.1
2,170,447	-		GFF5156	0.67	+0.3
2,170,483	-		GFF5156	0.70	+0.3
2,170,572	+		GFF5156	0.79	+0.7
2,170,573	-		GFF5156	0.79	+1.6
2,170,933	+		GFF5157	0.19	-0.3
2,170,933	+		GFF5157	0.19	-0.1
2,170,934	-		GFF5157	0.19	-0.3
2,170,939	+		GFF5157	0.20	+0.7
2,170,939	+		GFF5157	0.20	+1.3
2,170,939	+		GFF5157	0.20	+0.5
2,170,939	+		GFF5157	0.20	+0.6
2,170,939	+		GFF5157	0.20	+0.4
2,170,940	-		GFF5157	0.21	+0.6
2,170,940	-		GFF5157	0.21	-0.4
2,171,166	+		GFF5157	0.66	+0.5
2,171,167	-		GFF5157	0.66	+0.1
2,171,167	-		GFF5157	0.66	-0.4
2,171,188	+		GFF5157	0.70	+1.4
2,171,188	+		GFF5157	0.70	+1.4
2,171,188	+		GFF5157	0.70	+1.1
2,171,188	+		GFF5157	0.70	+0.9
2,171,320	+				-0.7
2,171,320	+				-0.3
2,171,320	+				+0.1
2,171,321	-				+0.6
2,171,321	-				-0.1
2,171,321	-				-0.9
2,171,321	-				+0.4
2,171,361	+				-0.4
2,171,362	-				+0.9
2,171,362	-				+0.3
2,171,389	+				-1.2
2,171,389	+				-0.3
2,171,390	-				+0.4
2,171,390	-				-0.9
2,171,390	-				+0.4
2,171,546	-				+0.0
2,171,546	-				-0.1
2,171,546	-				+1.3
2,171,603	-				-0.3
2,171,603	-				-0.6
2,171,716	+				+1.7
2,171,717	-				+0.4
2,171,717	-				+1.9
2,171,717	-				+0.9
2,171,717	-				+0.2
2,171,755	+				+0.6
2,171,756	-				+0.3
2,171,756	-				+0.9
2,171,797	+				+0.6
2,171,798	-				-1.1
2,171,851	+		GFF5158	0.11	+0.9
2,171,852	-		GFF5158	0.11	+0.3
2,171,887	+		GFF5158	0.12	+0.4
2,171,887	+		GFF5158	0.12	-0.2
2,171,888	-		GFF5158	0.12	+0.7
2,171,888	-		GFF5158	0.12	+0.4
2,171,926	+		GFF5158	0.13	+1.5
2,171,926	+		GFF5158	0.13	-1.1
2,171,926	+		GFF5158	0.13	+0.4
2,171,927	-		GFF5158	0.13	+0.1
2,171,927	-		GFF5158	0.13	+0.3
2,172,208	+		GFF5158	0.19	+0.5
2,172,208	+		GFF5158	0.19	+0.4
2,172,208	+		GFF5158	0.19	+0.1
2,172,208	+		GFF5158	0.19	+1.1
2,172,209	-		GFF5158	0.19	-0.3
2,172,209	-		GFF5158	0.19	+1.8
2,172,209	-		GFF5158	0.19	-0.9
2,172,209	-		GFF5158	0.19	+0.1
2,172,235	+		GFF5158	0.20	+0.3
2,172,281	-		GFF5158	0.21	-0.1
2,172,523	+		GFF5158	0.26	+0.5
2,172,523	+		GFF5158	0.26	-0.1
2,172,523	+		GFF5158	0.26	+0.7
2,172,523	+		GFF5158	0.26	+0.2
2,172,523	+		GFF5158	0.26	+2.0
2,172,523	+		GFF5158	0.26	+0.2
2,172,523	+		GFF5158	0.26	+0.9
2,172,524	-		GFF5158	0.26	+0.2
2,172,571	+		GFF5158	0.27	+0.6
2,172,571	+		GFF5158	0.27	+0.6
2,172,571	+		GFF5158	0.27	+0.6
2,172,572	-		GFF5158	0.27	+1.4
2,172,634	+		GFF5158	0.29	+0.5
2,172,635	-		GFF5158	0.29	+0.1
2,172,712	+		GFF5158	0.31	-0.3
2,172,712	+		GFF5158	0.31	-0.5
2,172,961	+		GFF5158	0.36	+0.2
2,172,961	+		GFF5158	0.36	+0.9
2,173,202	+		GFF5158	0.42	+0.9
2,173,204	+		GFF5158	0.42	+0.2
2,173,204	+		GFF5158	0.42	+0.3
2,173,204	+		GFF5158	0.42	+0.3
2,173,204	+		GFF5158	0.42	+0.5
2,173,204	+		GFF5158	0.42	+0.9
2,173,204	+		GFF5158	0.42	+0.6
2,173,204	+		GFF5158	0.42	+0.4
2,173,204	+		GFF5158	0.42	-0.4
2,173,205	-		GFF5158	0.42	+1.3
2,173,205	-		GFF5158	0.42	+0.1
2,173,270	+		GFF5158	0.43	-0.1
2,173,270	+		GFF5158	0.43	+1.4
2,173,270	+		GFF5158	0.43	+0.9
2,173,271	-		GFF5158	0.43	+0.1
2,173,271	-		GFF5158	0.43	+0.4
2,173,292	-		GFF5158	0.44	+0.5
2,173,292	-		GFF5158	0.44	-0.2
2,173,342	+		GFF5158	0.45	+0.7
2,173,343	-		GFF5158	0.45	-0.3
2,173,396	+		GFF5158	0.46	+0.9
2,173,430	-		GFF5158	0.47	+1.1
2,173,430	-		GFF5158	0.47	-0.4
2,173,430	-		GFF5158	0.47	+1.4
2,173,462	+		GFF5158	0.48	-0.2
2,173,463	-		GFF5158	0.48	+0.2
2,173,579	+		GFF5158	0.50	+0.2
2,173,672	+		GFF5158	0.53	+0.6
2,173,771	+		GFF5158	0.55	+0.1
2,173,771	+		GFF5158	0.55	-0.1
2,173,772	-		GFF5158	0.55	-0.0
2,173,903	+		GFF5158	0.58	+0.6
2,173,903	+		GFF5158	0.58	+1.4
2,173,903	+		GFF5158	0.58	+0.2
2,173,904	-		GFF5158	0.58	+0.1
2,173,951	+		GFF5158	0.59	+0.6
2,174,089	+		GFF5158	0.62	+1.4
2,174,266	+		GFF5158	0.66	+0.3
2,174,266	+		GFF5158	0.66	-0.7
2,174,266	+		GFF5158	0.66	+0.4
2,174,266	+		GFF5158	0.66	-0.4
2,174,266	+		GFF5158	0.66	+0.4
2,174,266	+		GFF5158	0.66	+0.3
2,174,267	+		GFF5158	0.66	+0.6
2,174,383	+		GFF5158	0.69	+1.0
2,174,383	+		GFF5158	0.69	+1.5
2,174,384	-		GFF5158	0.69	+1.0
2,174,384	-		GFF5158	0.69	+0.6
2,174,384	-		GFF5158	0.69	+0.1
2,174,395	+		GFF5158	0.69	+0.1
2,174,395	+		GFF5158	0.69	+0.1
2,174,398	+		GFF5158	0.69	+0.0
2,174,398	+		GFF5158	0.69	+1.0
2,174,399	-		GFF5158	0.69	+0.3
2,174,399	-		GFF5158	0.69	-0.1
2,174,455	+		GFF5158	0.71	+0.4
2,174,455	+		GFF5158	0.71	+1.1
2,174,455	+		GFF5158	0.71	+0.9
2,174,456	-		GFF5158	0.71	+0.0
2,174,456	-		GFF5158	0.71	+0.6
2,174,456	-		GFF5158	0.71	-0.1
2,174,456	-		GFF5158	0.71	-0.0
2,174,456	-		GFF5158	0.71	+0.5
2,174,456	-		GFF5158	0.71	+0.3
2,174,461	+		GFF5158	0.71	+0.9
2,174,462	-		GFF5158	0.71	+0.7
2,174,552	-		GFF5158	0.73	-1.1
2,174,698	+		GFF5158	0.76	+0.6
2,174,698	+		GFF5158	0.76	+0.9
2,174,698	+		GFF5158	0.76	+0.1
2,174,698	+		GFF5158	0.76	+0.1
2,174,699	-		GFF5158	0.76	+3.2
2,174,699	-		GFF5158	0.76	-0.1
2,174,699	-		GFF5158	0.76	+0.6
2,174,825	-		GFF5158	0.79	+3.5
2,174,906	-		GFF5158	0.81	+1.9
2,174,974	+		GFF5158	0.82	-0.4
2,174,974	+		GFF5158	0.82	+0.4
2,174,975	-		GFF5158	0.82	+0.4
2,174,975	-		GFF5158	0.82	+1.6
2,175,046	+		GFF5158	0.84	+0.6
2,175,091	+		GFF5158	0.85	+0.5
2,175,250	+		GFF5158	0.89	-0.0
2,175,251	-		GFF5158	0.89	+0.5
2,175,346	+				+0.3
2,175,347	-				-0.0
2,175,388	+				+1.9
2,175,389	-				-0.4
2,175,524	+				-1.3
2,175,524	+				+0.2
2,175,525	-				-0.1
2,175,794	+		GFF5159	0.11	+0.5
2,175,860	+		GFF5159	0.26	-1.5
2,175,860	+		GFF5159	0.26	+0.3
2,175,860	+		GFF5159	0.26	-0.5
2,175,932	+		GFF5159	0.43	+0.1
2,176,009	+		GFF5159	0.61	-2.6
2,176,050	-		GFF5159	0.71	-0.1
2,176,066	-		GFF5159	0.74	+0.0