Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4770

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,778,781	+				-0.0
1,778,782	-				+0.6
1,778,826	+		GFF4769	0.12	+0.4
1,778,841	+		GFF4769	0.14	-0.0
1,778,842	-		GFF4769	0.14	-0.1
1,778,842	-		GFF4769	0.14	+0.6
1,778,842	-		GFF4769	0.14	-0.3
1,778,842	-		GFF4769	0.14	-1.2
1,778,842	-		GFF4769	0.14	+1.6
1,778,886	+		GFF4769	0.18	-0.2
1,778,887	-		GFF4769	0.18	-0.1
1,778,887	-		GFF4769	0.18	-0.3
1,778,967	+		GFF4769	0.26	+0.2
1,778,967	+		GFF4769	0.26	+0.5
1,778,968	-		GFF4769	0.26	+0.2
1,779,021	+		GFF4769	0.31	+0.2
1,779,021	+		GFF4769	0.31	+0.1
1,779,022	-		GFF4769	0.31	+0.8
1,779,045	+		GFF4769	0.33	-0.3
1,779,046	-		GFF4769	0.33	+0.2
1,779,190	-		GFF4769	0.47	-0.3
1,779,190	-		GFF4769	0.47	+0.8
1,779,337	-		GFF4769	0.61	-0.1
1,779,481	-		GFF4769	0.75	+0.3
1,779,481	-		GFF4769	0.75	+1.0
1,779,588	+		GFF4769	0.85	+0.2
1,779,588	+		GFF4769	0.85	+0.2
1,779,588	+		GFF4769	0.85	-0.0
1,779,589	-		GFF4769	0.85	+0.2
1,779,589	-		GFF4769	0.85	+0.2
1,779,589	-		GFF4769	0.85	-0.4
1,779,853	+		GFF4770	0.13	+0.0
1,779,854	-		GFF4770	0.13	+0.1
1,779,929	-		GFF4770	0.22	+0.4
1,779,929	-		GFF4770	0.22	+0.6
1,779,929	-		GFF4770	0.22	+1.2
1,779,929	-		GFF4770	0.22	-0.2
1,780,010	-		GFF4770	0.31	+0.3
1,780,010	-		GFF4770	0.31	+1.3
1,780,010	-		GFF4770	0.31	-0.4
1,780,094	-		GFF4770	0.41	+0.6
1,780,123	+		GFF4770	0.44	+0.0
1,780,145	-		GFF4770	0.47	+0.2
1,780,160	-		GFF4770	0.49	+0.8
1,780,525	+				+0.7
1,780,525	+				-2.0
1,780,526	-				+0.3
1,780,552	+				+0.2
1,780,552	+				+0.5
1,780,552	+				-0.7
1,780,553	-				+0.1
1,780,553	-				-0.2
1,781,138	+		GFF4771	0.46	+0.1
1,781,139	-		GFF4771	0.47	-1.0
1,781,139	-		GFF4771	0.47	-0.6