Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4589

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,533,495	+				+0.1
1,533,582	+		GFF4588	0.12	+0.8
1,533,582	+		GFF4588	0.12	+1.6
1,533,582	+		GFF4588	0.12	-0.2
1,533,583	-		GFF4588	0.12	-2.2
1,533,583	-		GFF4588	0.12	+1.0
1,533,597	+		GFF4588	0.14	+0.0
1,533,597	+		GFF4588	0.14	-0.4
1,533,597	+		GFF4588	0.14	+0.2
1,533,598	-		GFF4588	0.14	-0.4
1,533,598	-		GFF4588	0.14	+0.1
1,533,598	-		GFF4588	0.14	-1.2
1,533,598	-		GFF4588	0.14	+0.8
1,533,598	-		GFF4588	0.14	-0.2
1,533,606	+		GFF4588	0.14	+1.8
1,533,717	+		GFF4588	0.25	-0.0
1,533,718	-		GFF4588	0.25	-0.6
1,533,759	+		GFF4588	0.29	+0.3
1,533,759	+		GFF4588	0.29	+0.5
1,533,760	-		GFF4588	0.29	+0.8
1,533,760	-		GFF4588	0.29	+0.3
1,534,383	+		GFF4588	0.90	+0.6
1,534,426	-				-0.5
1,534,656	+		GFF4589	0.13	-1.0
1,534,656	+		GFF4589	0.13	+0.0
1,534,657	-		GFF4589	0.13	-0.1
1,534,707	+		GFF4589	0.16	-0.0
1,535,022	+		GFF4589	0.41	+0.1
1,535,037	+		GFF4589	0.42	-0.4
1,535,038	-		GFF4589	0.42	-0.0
1,535,163	+		GFF4589	0.52	+1.4
1,535,164	-		GFF4589	0.52	-0.3
1,535,164	-		GFF4589	0.52	+0.2
1,535,275	-		GFF4589	0.60	+0.1
1,535,425	-		GFF4589	0.72	+0.2
1,535,425	-		GFF4589	0.72	-0.1
1,535,509	-		GFF4589	0.78	-0.5
1,535,574	+		GFF4589	0.84	+0.1
1,535,574	+		GFF4589	0.84	+0.3
1,535,574	+		GFF4589	0.84	+0.4
1,535,575	-		GFF4589	0.84	+0.4
1,535,748	+				+0.2
1,535,749	-				+0.3
1,535,749	-				+1.2
1,535,807	+				-0.4
1,535,808	-				-1.0
1,536,129	-		GFF4590	0.44	+0.4
1,536,134	+		GFF4590	0.44	+0.6
1,536,134	+		GFF4590	0.44	+0.1
1,536,134	+		GFF4590	0.44	+0.3
1,536,134	+		GFF4590	0.44	-0.5
1,536,135	-		GFF4590	0.45	+0.5
1,536,248	+		GFF4590	0.59	-1.5
1,536,248	+		GFF4590	0.59	-1.2
1,536,527	+				+0.6
1,536,598	+				-0.1
1,536,778	+		GFF4591	0.30	+0.4
1,536,779	-		GFF4591	0.30	+0.4
1,536,779	-		GFF4591	0.30	-0.2