Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4260

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,182,628	+		GFF4258	0.60	+0.4
1,182,628	+		GFF4258	0.60	-0.1
1,182,628	+		GFF4258	0.60	-0.3
1,182,629	-		GFF4258	0.61	-0.2
1,182,629	-		GFF4258	0.61	-0.6
1,182,629	-		GFF4258	0.61	-0.7
1,182,629	-		GFF4258	0.61	+0.5
1,182,701	+		GFF4258	0.70	+0.3
1,182,701	+		GFF4258	0.70	-0.1
1,182,702	-		GFF4258	0.70	-0.6
1,182,724	+		GFF4258	0.73	+0.8
1,182,763	+		GFF4258	0.78	+0.7
1,182,764	-		GFF4258	0.78	-0.5
1,182,817	+		GFF4258	0.85	+0.2
1,182,818	-		GFF4258	0.86	-1.0
1,182,818	-		GFF4258	0.86	-1.2
1,182,818	-		GFF4258	0.86	+0.6
1,182,957	+				-0.4
1,182,957	+				-0.4
1,182,992	-				-0.6
1,183,186	+		GFF4259	0.49	-0.3
1,183,187	-		GFF4259	0.49	-0.5
1,183,452	+				-0.3
1,183,453	-				-0.5
1,183,542	+				-0.0
1,183,542	+				+0.3
1,183,542	+				+0.3
1,183,543	-				-0.3
1,183,543	-				+0.5
1,183,543	-				-1.0
1,183,543	-				-1.0
1,183,543	-				-1.6
1,184,103	+		GFF4260	0.51	-0.5
1,184,103	+		GFF4260	0.51	+0.4
1,184,103	+		GFF4260	0.51	+0.8
1,184,103	+		GFF4260	0.51	-0.6
1,184,103	+		GFF4260	0.51	-0.9
1,184,104	-		GFF4260	0.51	-1.5
1,184,104	-		GFF4260	0.51	+1.3
1,184,104	-		GFF4260	0.51	+0.3
1,184,445	+		GFF4260	0.81	+0.3
1,184,445	+		GFF4260	0.81	-0.9
1,184,445	+		GFF4260	0.81	+0.5
1,184,446	-		GFF4260	0.81	-0.1
1,184,451	+		GFF4260	0.82	-1.4
1,184,451	+		GFF4260	0.82	+0.1
1,184,452	-		GFF4260	0.82	-0.1
1,184,452	-		GFF4260	0.82	+0.3
1,184,452	-		GFF4260	0.82	-0.2
1,185,210	+		GFF4261	0.17	-0.0
1,185,210	+		GFF4261	0.17	+0.5