Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4213

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,124,418	+		GFF4211	0.89	-1.9
1,124,418	+		GFF4211	0.89	-4.2
1,124,419	-		GFF4211	0.89	-2.6
1,124,544	+				+0.2
1,124,545	-				-2.2
1,124,545	-				-0.1
1,125,437	+		GFF4213	0.24	+1.5
1,125,437	+		GFF4213	0.24	+0.3
1,125,468	-		GFF4213	0.28	+0.2
1,125,510	-		GFF4213	0.35	+0.9
1,125,617	+		GFF4213	0.51	+0.5
1,125,617	+		GFF4213	0.51	+0.8
1,125,617	+		GFF4213	0.51	+1.2
1,125,617	+		GFF4213	0.51	+1.3
1,125,617	+		GFF4213	0.51	+0.3
1,125,618	-		GFF4213	0.51	+0.4
1,125,618	-		GFF4213	0.51	-0.1
1,125,618	-		GFF4213	0.51	+0.1
1,125,683	+		GFF4213	0.61	+0.4
1,125,683	+		GFF4213	0.61	+0.3
1,125,683	+		GFF4213	0.61	+0.4
1,125,684	-		GFF4213	0.62	-0.1
1,125,684	-		GFF4213	0.62	+0.4
1,125,726	-		GFF4213	0.68	+0.6
1,125,943	+				+0.7
1,125,944	-				-0.7
1,125,944	-				+0.0
1,126,080	+				+0.6
1,126,149	+				-0.1
1,126,149	+				-0.1
1,126,150	-				-0.7
1,126,150	-				+1.3
1,126,150	-				+0.5
1,126,182	+		GFF4214	0.10	-0.4
1,126,182	+		GFF4214	0.10	+0.4
1,126,182	+		GFF4214	0.10	-0.4
1,126,182	+		GFF4214	0.10	-0.1
1,126,183	-		GFF4214	0.10	+0.1
1,126,183	-		GFF4214	0.10	-0.3
1,126,183	-		GFF4214	0.10	-0.1
1,126,188	+		GFF4214	0.11	-0.7
1,126,188	+		GFF4214	0.11	-0.7
1,126,188	+		GFF4214	0.11	-0.4
1,126,188	+		GFF4214	0.11	+0.6
1,126,188	+		GFF4214	0.11	+0.1
1,126,189	-		GFF4214	0.11	-0.5
1,126,189	-		GFF4214	0.11	-0.4
1,126,189	-		GFF4214	0.11	-0.1
1,126,189	-		GFF4214	0.11	-1.0
1,126,189	-		GFF4214	0.11	+0.6
1,126,191	+		GFF4214	0.11	-0.5
1,126,248	+		GFF4214	0.14	-0.5
1,126,249	-		GFF4214	0.14	-0.7
1,126,399	+		GFF4214	0.21	+0.7
1,126,401	+		GFF4214	0.21	-0.6
1,126,401	+		GFF4214	0.21	+0.1
1,126,402	-		GFF4214	0.21	-0.7
1,126,402	-		GFF4214	0.21	-0.3
1,126,402	-		GFF4214	0.21	-0.0
1,126,806	+		GFF4214	0.40	+0.1
1,126,807	-		GFF4214	0.40	-0.2
1,126,807	-		GFF4214	0.40	-1.1
1,126,858	-		GFF4214	0.43	+0.6