Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4149

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,060,320	+				-0.6
1,060,321	-				-0.1
1,060,321	-				-0.1
1,060,385	+				+0.6
1,060,385	+				-0.4
1,060,385	+				+0.1
1,060,386	-				-0.1
1,060,386	-				-0.3
1,060,386	-				-0.5
1,060,386	-				+0.1
1,060,386	-				-0.7
1,060,403	-				+0.2
1,060,469	+				-0.1
1,060,469	+				+0.1
1,060,469	+				-0.2
1,060,469	+				-0.3
1,060,470	-				+0.3
1,060,470	-				+1.1
1,060,514	+				-0.1
1,060,515	-				-0.1
1,060,794	+				-0.6
1,060,794	+				+0.2
1,060,795	-				-1.5
1,060,849	-				+0.3
1,060,849	-				-0.4
1,060,849	-				+0.5
1,060,951	+				-0.6
1,060,951	+				+0.1
1,060,951	+				+0.4
1,060,952	-				+0.6
1,060,952	-				-0.0
1,061,049	+				+1.3
1,061,049	+				+0.0
1,061,049	+				+0.5
1,061,050	-				-0.1
1,061,177	-				+0.2
1,061,239	+				+0.0
1,061,247	+				-0.4
1,061,247	+				-0.1
1,061,247	+				-1.1
1,061,247	+				+0.3
1,061,247	+				-0.6
1,061,248	-				-0.3
1,061,248	-				-0.7
1,061,248	-				-0.6
1,061,264	-				-0.3
1,061,304	-		GFF4149	0.16	+0.3
1,061,330	+		GFF4149	0.27	+0.6
1,061,611	+				-0.1
1,061,612	-				-0.8
1,061,631	-				-1.1
1,061,641	+				-0.9
1,061,642	-				+0.6
1,061,656	+				+1.5
1,061,656	+				+1.3
1,061,656	+				-0.7
1,061,656	+				+0.3
1,061,656	+				+0.4
1,061,657	-				+1.1
1,061,657	-				-1.0
1,061,706	-				+0.2
1,061,776	+				+0.4
1,061,776	+				-0.0
1,061,776	+				-0.5
1,061,777	-				+0.7
1,061,777	-				+0.2
1,061,812	+				-0.2
1,061,812	+				+0.4
1,061,812	+				+0.9
1,061,813	-				-1.9
1,061,813	-				-0.6
1,061,813	-				-0.1
1,061,819	+				+0.1
1,061,849	+				+0.0
1,061,849	+				+1.4
1,062,075	+		GFF4150	0.28	-0.3
1,062,076	-		GFF4150	0.28	+0.1
1,062,076	-		GFF4150	0.28	+1.0
1,062,076	-		GFF4150	0.28	+0.1
1,062,216	+		GFF4150	0.39	+0.4
1,062,216	+		GFF4150	0.39	+0.3
1,062,216	+		GFF4150	0.39	+0.2
1,062,216	+		GFF4150	0.39	+0.2
1,062,216	+		GFF4150	0.39	+0.1
1,062,216	+		GFF4150	0.39	-0.0
1,062,216	+		GFF4150	0.39	+1.3
1,062,217	-		GFF4150	0.39	-0.1
1,062,217	-		GFF4150	0.39	+0.8
1,062,217	-		GFF4150	0.39	+0.2
1,062,217	-		GFF4150	0.39	+0.4
1,062,217	-		GFF4150	0.39	-0.6
1,062,217	-		GFF4150	0.39	+0.5
1,062,217	-		GFF4150	0.39	-0.4
1,062,330	+		GFF4150	0.49	+0.1
1,062,331	-		GFF4150	0.49	-0.4
1,062,331	-		GFF4150	0.49	+0.5
1,062,426	+		GFF4150	0.57	-0.3
1,062,426	+		GFF4150	0.57	+0.2
1,062,426	+		GFF4150	0.57	+0.5
1,062,426	+		GFF4150	0.57	+0.6
1,062,426	+		GFF4150	0.57	-0.8
1,062,426	+		GFF4150	0.57	+0.6
1,062,426	+		GFF4150	0.57	+0.0
1,062,426	+		GFF4150	0.57	-0.0
1,062,426	+		GFF4150	0.57	-0.2
1,062,426	+		GFF4150	0.57	+0.3
1,062,426	+		GFF4150	0.57	+0.4
1,062,426	+		GFF4150	0.57	-1.0
1,062,426	+		GFF4150	0.57	+1.3
1,062,426	+		GFF4150	0.57	-0.1
1,062,426	+		GFF4150	0.57	-1.1
1,062,426	+		GFF4150	0.57	+1.0
1,062,426	+		GFF4150	0.57	-0.8
1,062,426	+		GFF4150	0.57	-0.1
1,062,426	-		GFF4150	0.57	+0.1
1,062,427	-		GFF4150	0.57	+0.4
1,062,427	-		GFF4150	0.57	+0.7
1,062,427	-		GFF4150	0.57	-0.5
1,062,427	-		GFF4150	0.57	-0.4
1,062,427	-		GFF4150	0.57	+0.4
1,062,427	-		GFF4150	0.57	+1.0
1,062,427	-		GFF4150	0.57	+0.4
1,062,427	-		GFF4150	0.57	+0.4
1,062,427	-		GFF4150	0.57	-0.4
1,062,427	-		GFF4150	0.57	+0.6
1,062,427	-		GFF4150	0.57	-0.1
1,062,427	-		GFF4150	0.57	+0.9
1,062,427	-		GFF4150	0.57	+1.1
1,062,427	-		GFF4150	0.57	-0.1