Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4085

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4084 and GFF4085 are separated by 194 nucleotidesGFF4085 and GFF4086 are separated by 101 nucleotides GFF4084 - ubiquinone/menaquinone biosynthesis methyltransferase, at 996,407 to 997,255 GFF4084 GFF4085 - Flagellin protein FlaA, at 997,450 to 998,334 GFF4085 GFF4086 - hypothetical protein, at 998,436 to 999,407 GFF4086 Position (kb) 997 998 999Strain fitness (log2 ratio) -1 0 1at 996.600 kb on + strand, within GFF4084at 996.600 kb on + strand, within GFF4084at 997.209 kb on + strandat 997.209 kb on + strandat 997.210 kb on - strandat 997.397 kb on + strandat 997.398 kb on - strandat 997.443 kb on - strandat 997.471 kb on + strandat 997.471 kb on + strandat 997.471 kb on + strandat 998.002 kb on + strand, within GFF4085at 998.003 kb on - strand, within GFF4085at 998.155 kb on + strand, within GFF4085at 998.156 kb on - strand, within GFF4085at 998.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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996,600 + GFF4084 0.23 -0.3
996,600 + GFF4084 0.23 +0.7
997,209 + -1.0
997,209 + -1.0
997,210 - -0.2
997,397 + +0.5
997,398 - -0.1
997,443 - +1.3
997,471 + -0.1
997,471 + -0.3
997,471 + -1.1
998,002 + GFF4085 0.62 -0.3
998,003 - GFF4085 0.62 +0.5
998,155 + GFF4085 0.80 +0.6
998,156 - GFF4085 0.80 +0.9
998,333 - -0.0

Or see this region's nucleotide sequence