Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4041

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4040 and GFF4041 are separated by 137 nucleotidesGFF4041 and GFF4042 overlap by 68 nucleotidesGFF4042 and GFF4043 are separated by 135 nucleotides GFF4040 - Cell division trigger factor (EC 5.2.1.8), at 959,588 to 960,898 GFF4040 GFF4041 - hypothetical protein, at 961,036 to 961,155 GFF4041 GFF4042 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 961,088 to 961,705 GFF4042 GFF4043 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 961,841 to 963,106 GFF4043 Position (kb) 961 962Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 960.254 kb on + strand, within GFF4040at 960.255 kb on - strand, within GFF4040at 960.255 kb on - strand, within GFF4040at 960.734 kb on + strand, within GFF4040at 960.734 kb on + strand, within GFF4040at 960.734 kb on + strand, within GFF4040at 960.735 kb on - strand, within GFF4040at 960.735 kb on - strand, within GFF4040at 960.735 kb on - strand, within GFF4040at 960.765 kb on - strand, within GFF4040at 961.047 kb on + strandat 961.047 kb on + strandat 961.047 kb on + strandat 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.048 kb on - strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.052 kb on + strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.053 kb on - strand, within GFF4041at 961.058 kb on + strand, within GFF4041at 961.058 kb on + strand, within GFF4041at 961.059 kb on - strand, within GFF4041at 961.163 kb on + strand, within GFF4042at 961.164 kb on - strand, within GFF4042at 961.164 kb on - strand, within GFF4042at 961.172 kb on + strand, within GFF4042at 961.172 kb on + strand, within GFF4042at 961.239 kb on + strand, within GFF4042at 961.239 kb on + strand, within GFF4042at 961.240 kb on - strand, within GFF4042at 961.240 kb on - strand, within GFF4042at 961.298 kb on + strand, within GFF4042at 961.298 kb on + strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.299 kb on - strand, within GFF4042at 961.628 kb on + strand, within GFF4042at 961.631 kb on + strand, within GFF4042at 961.632 kb on - strand, within GFF4042at 961.658 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.802 kb on + strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.803 kb on - strandat 961.814 kb on + strandat 961.814 kb on + strandat 961.814 kb on + strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.815 kb on - strandat 961.840 kb on + strandat 961.840 kb on + strandat 961.840 kb on + strandat 961.880 kb on + strandat 961.880 kb on + strandat 961.881 kb on - strandat 961.881 kb on - strandat 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.072 kb on + strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.073 kb on - strand, within GFF4043at 962.121 kb on - strand, within GFF4043at 962.121 kb on - strand, within GFF4043at 962.129 kb on + strand, within GFF4043at 962.129 kb on + strand, within GFF4043at 962.129 kb on + strand, within GFF4043

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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960,254 + GFF4040 0.51 -0.6
960,255 - GFF4040 0.51 -0.2
960,255 - GFF4040 0.51 +0.1
960,734 + GFF4040 0.87 +0.4
960,734 + GFF4040 0.87 -0.8
960,734 + GFF4040 0.87 +0.1
960,735 - GFF4040 0.87 +0.8
960,735 - GFF4040 0.87 -0.4
960,735 - GFF4040 0.87 +0.1
960,765 - GFF4040 0.90 -0.2
961,047 + -0.1
961,047 + +0.1
961,047 + -0.3
961,048 - GFF4041 0.10 -0.1
961,048 - GFF4041 0.10 -0.1
961,048 - GFF4041 0.10 +0.7
961,048 - GFF4041 0.10 -0.3
961,052 + GFF4041 0.13 -0.6
961,052 + GFF4041 0.13 +1.0
961,052 + GFF4041 0.13 +0.2
961,052 + GFF4041 0.13 -0.5
961,052 + GFF4041 0.13 -0.0
961,052 + GFF4041 0.13 -0.2
961,053 - GFF4041 0.14 +1.8
961,053 - GFF4041 0.14 +1.8
961,053 - GFF4041 0.14 +1.8
961,053 - GFF4041 0.14 +2.2
961,053 - GFF4041 0.14 +1.2
961,058 + GFF4041 0.18 -0.2
961,058 + GFF4041 0.18 -0.0
961,059 - GFF4041 0.19 +0.0
961,163 + GFF4042 0.12 +3.1
961,164 - GFF4042 0.12 +3.4
961,164 - GFF4042 0.12 +4.0
961,172 + GFF4042 0.14 +3.2
961,172 + GFF4042 0.14 +3.3
961,239 + GFF4042 0.24 +3.0
961,239 + GFF4042 0.24 +4.5
961,240 - GFF4042 0.25 +3.5
961,240 - GFF4042 0.25 +3.3
961,298 + GFF4042 0.34 +0.8
961,298 + GFF4042 0.34 +2.6
961,299 - GFF4042 0.34 +2.8
961,299 - GFF4042 0.34 +3.7
961,299 - GFF4042 0.34 +1.9
961,628 + GFF4042 0.87 +2.7
961,631 + GFF4042 0.88 +4.0
961,632 - GFF4042 0.88 +3.6
961,658 + +2.7
961,802 + +0.0
961,802 + -1.2
961,802 + +0.0
961,802 + +0.2
961,802 + -0.6
961,802 + -1.0
961,802 + -0.3
961,802 + -0.2
961,802 + +0.2
961,802 + +0.4
961,803 - -0.6
961,803 - +2.4
961,803 - +0.5
961,803 - +1.0
961,803 - -0.5
961,803 - -0.8
961,803 - +1.8
961,803 - -0.6
961,803 - +0.1
961,814 + -0.7
961,814 + +0.0
961,814 + -0.2
961,815 - -0.5
961,815 - +0.8
961,815 - -0.3
961,815 - -0.4
961,815 - +0.6
961,815 - +0.6
961,840 + -0.3
961,840 + -0.6
961,840 + -0.5
961,880 + +0.1
961,880 + +0.7
961,881 - -0.7
961,881 - +0.5
962,072 + GFF4043 0.18 +0.1
962,072 + GFF4043 0.18 +2.2
962,072 + GFF4043 0.18 -0.6
962,072 + GFF4043 0.18 +0.1
962,072 + GFF4043 0.18 +0.7
962,072 + GFF4043 0.18 -0.5
962,072 + GFF4043 0.18 -0.2
962,072 + GFF4043 0.18 -0.2
962,072 + GFF4043 0.18 +0.2
962,073 - GFF4043 0.18 +0.3
962,073 - GFF4043 0.18 -0.6
962,073 - GFF4043 0.18 -0.2
962,073 - GFF4043 0.18 -0.4
962,073 - GFF4043 0.18 +0.4
962,073 - GFF4043 0.18 -1.5
962,073 - GFF4043 0.18 +0.4
962,073 - GFF4043 0.18 -0.2
962,073 - GFF4043 0.18 -2.6
962,073 - GFF4043 0.18 -0.3
962,073 - GFF4043 0.18 +0.3
962,073 - GFF4043 0.18 -0.3
962,121 - GFF4043 0.22 +0.4
962,121 - GFF4043 0.22 -1.2
962,129 + GFF4043 0.23 -0.0
962,129 + GFF4043 0.23 -0.6
962,129 + GFF4043 0.23 -0.3

Or see this region's nucleotide sequence