Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4005

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
919,479	+				-0.2
919,480	-				+0.3
919,480	-				-0.5
919,480	-				-1.2
919,618	-		GFF4004	0.24	-0.4
919,618	-		GFF4004	0.24	-0.2
920,612	-		GFF4005	0.62	+0.9
920,612	-		GFF4005	0.62	+0.8
921,024	+		GFF4006	0.21	-0.0
921,025	-		GFF4006	0.21	-0.4
921,025	-		GFF4006	0.21	-0.2
921,219	+		GFF4006	0.36	+0.6
921,315	+		GFF4006	0.44	+0.5
921,316	-		GFF4006	0.44	-1.5
921,441	+		GFF4006	0.54	+0.3
921,441	+		GFF4006	0.54	+0.6
921,442	-		GFF4006	0.54	+0.1
921,663	+		GFF4006	0.72	-0.9
921,663	+		GFF4006	0.72	+0.3
921,664	-		GFF4006	0.72	+0.2
921,664	-		GFF4006	0.72	+0.4
921,670	-		GFF4006	0.73	+0.8
921,714	+		GFF4006	0.76	-0.2
921,715	-		GFF4006	0.76	-0.2