Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3796 and GFF3797 are separated by 129 nucleotides GFF3797 and GFF3798 are separated by 34 nucleotides GFF3798 and GFF3799 are separated by 10 nucleotides GFF3799 and GFF3800 are separated by 9 nucleotides
GFF3796 - Transcriptional regulator ligR, LysR family, at 696,369 to 697,265
GFF3796
GFF3797 - Hypothetical ABC transport system, periplasmic component, at 697,395 to 698,096
GFF3797
GFF3798 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 698,131 to 699,165
GFF3798
GFF3799 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17), at 699,176 to 699,859
GFF3799
GFF3800 - 2-pyrone-4,6-dicarboxylic acid hydrolase, at 699,869 to 700,801
GFF3800
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 697.243 kb on + strand at 697.243 kb on + strand at 697.243 kb on + strand at 697.244 kb on - strand at 697.244 kb on - strand at 697.294 kb on + strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand at 697.750 kb on - strand, within GFF3797 at 698.161 kb on + strand at 698.161 kb on + strand at 698.162 kb on - strand at 698.539 kb on + strand, within GFF3798 at 698.556 kb on + strand, within GFF3798 at 698.557 kb on - strand, within GFF3798 at 698.621 kb on - strand, within GFF3798 at 698.630 kb on - strand, within GFF3798 at 698.647 kb on + strand, within GFF3798 at 698.648 kb on - strand, within GFF3798 at 698.716 kb on + strand, within GFF3798 at 698.717 kb on - strand, within GFF3798 at 698.824 kb on + strand, within GFF3798 at 698.825 kb on - strand, within GFF3798 at 698.825 kb on - strand, within GFF3798 at 699.031 kb on + strand, within GFF3798 at 699.032 kb on - strand, within GFF3798 at 699.034 kb on + strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.035 kb on - strand, within GFF3798 at 699.052 kb on + strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.053 kb on - strand, within GFF3798 at 699.055 kb on - strand, within GFF3798 at 699.100 kb on + strand at 699.101 kb on - strand at 699.101 kb on - strand at 699.101 kb on - strand at 699.163 kb on + strand at 699.164 kb on - strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.179 kb on + strand at 699.180 kb on - strand at 699.303 kb on - strand, within GFF3799 at 699.303 kb on - strand, within GFF3799 at 699.317 kb on + strand, within GFF3799 at 699.318 kb on - strand, within GFF3799 at 699.318 kb on - strand, within GFF3799 at 699.459 kb on - strand, within GFF3799 at 699.810 kb on - strand at 699.810 kb on - strand at 699.810 kb on - strand at 699.848 kb on + strand at 699.848 kb on + strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 699.849 kb on - strand at 700.032 kb on - strand, within GFF3800 at 700.032 kb on - strand, within GFF3800 at 700.064 kb on + strand, within GFF3800
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 697,243 + -0.2 697,243 + -0.7 697,243 + +0.1 697,244 - +1.1 697,244 - -0.4 697,294 + -0.3 697,295 - +0.2 697,295 - -0.4 697,295 - -0.1 697,295 - +0.1 697,295 - +1.4 697,298 + -0.1 697,298 + -0.1 697,750 - GFF3797 0.51 +0.0 698,161 + +0.1 698,161 + +0.2 698,162 - +0.3 698,539 + GFF3798 0.39 +0.5 698,556 + GFF3798 0.41 -0.7 698,557 - GFF3798 0.41 +1.4 698,621 - GFF3798 0.47 +1.9 698,630 - GFF3798 0.48 -0.9 698,647 + GFF3798 0.50 +3.0 698,648 - GFF3798 0.50 +0.5 698,716 + GFF3798 0.57 +0.7 698,717 - GFF3798 0.57 +0.2 698,824 + GFF3798 0.67 +0.2 698,825 - GFF3798 0.67 +0.8 698,825 - GFF3798 0.67 -2.1 699,031 + GFF3798 0.87 -0.2 699,032 - GFF3798 0.87 -1.1 699,034 + GFF3798 0.87 +0.1 699,035 - GFF3798 0.87 -0.6 699,035 - GFF3798 0.87 +0.9 699,052 + GFF3798 0.89 +0.9 699,053 - GFF3798 0.89 +0.7 699,053 - GFF3798 0.89 +0.3 699,055 - GFF3798 0.89 +0.9 699,100 + +0.3 699,101 - -0.2 699,101 - +0.5 699,101 - +0.4 699,163 + -0.7 699,164 - -0.3 699,179 + -0.1 699,179 + -0.1 699,179 + -0.5 699,179 + +0.9 699,179 + -0.2 699,180 - -1.5 699,303 - GFF3799 0.19 -0.3 699,303 - GFF3799 0.19 +0.9 699,317 + GFF3799 0.21 +0.4 699,318 - GFF3799 0.21 -0.5 699,318 - GFF3799 0.21 -0.2 699,459 - GFF3799 0.41 -2.1 699,810 - -0.0 699,810 - -0.2 699,810 - -0.2 699,848 + -0.4 699,848 + -0.4 699,849 - -0.2 699,849 - -0.1 699,849 - -0.4 699,849 - +0.0 699,849 - -0.8 700,032 - GFF3800 0.17 -0.9 700,032 - GFF3800 0.17 -1.9 700,064 + GFF3800 0.21 +0.2
Or see this region's nucleotide sequence