Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3786 and GFF3787 are separated by 3 nucleotides GFF3787 and GFF3788 are separated by 170 nucleotides GFF3788 and GFF3789 are separated by 447 nucleotides
GFF3786 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 684,957 to 686,795
GFF3786
GFF3787 - 2-hydroxychromene-2-carboxylate isomerase, at 686,799 to 687,428
GFF3787
GFF3788 - TRAP transporter solute receptor, unknown substrate 3, at 687,599 to 688,639
GFF3788
GFF3789 - Methionine synthase II (cobalamin-independent), at 689,087 to 690,217
GFF3789
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1
2 at 687.052 kb on + strand, within GFF3787 at 687.061 kb on + strand, within GFF3787 at 687.061 kb on + strand, within GFF3787 at 687.220 kb on + strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.221 kb on - strand, within GFF3787 at 687.358 kb on + strand, within GFF3787 at 687.410 kb on + strand at 687.410 kb on + strand at 687.411 kb on - strand at 687.416 kb on + strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.434 kb on + strand at 687.441 kb on + strand at 687.441 kb on + strand at 687.442 kb on - strand at 687.442 kb on - strand at 687.897 kb on - strand, within GFF3788 at 688.353 kb on - strand, within GFF3788 at 689.427 kb on + strand, within GFF3789 at 689.427 kb on + strand, within GFF3789 at 689.427 kb on + strand, within GFF3789 at 689.428 kb on - strand, within GFF3789 at 689.428 kb on - strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.637 kb on + strand, within GFF3789 at 689.637 kb on + strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 687,052 + GFF3787 0.40 -0.7 687,061 + GFF3787 0.42 +0.5 687,061 + GFF3787 0.42 +0.9 687,220 + GFF3787 0.67 -0.4 687,221 - GFF3787 0.67 -0.5 687,221 - GFF3787 0.67 +0.5 687,221 - GFF3787 0.67 +0.2 687,358 + GFF3787 0.89 -1.4 687,410 + +0.2 687,410 + +0.4 687,411 - +0.6 687,416 + +0.2 687,417 - +1.9 687,417 - -0.5 687,434 + +0.5 687,441 + -0.4 687,441 + -0.1 687,442 - -0.8 687,442 - -0.8 687,897 - GFF3788 0.29 +0.7 688,353 - GFF3788 0.72 +0.4 689,427 + GFF3789 0.30 -0.1 689,427 + GFF3789 0.30 -0.9 689,427 + GFF3789 0.30 +1.5 689,428 - GFF3789 0.30 -0.3 689,428 - GFF3789 0.30 -0.1 689,607 + GFF3789 0.46 -0.1 689,607 + GFF3789 0.46 -0.1 689,607 + GFF3789 0.46 -0.9 689,637 + GFF3789 0.49 -1.3 689,637 + GFF3789 0.49 +0.6 689,638 - GFF3789 0.49 +0.6 689,638 - GFF3789 0.49 +0.2 689,638 - GFF3789 0.49 +0.3 689,638 - GFF3789 0.49 +0.1
Or see this region's nucleotide sequence