Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3731 and GFF3732 are separated by 393 nucleotides GFF3732 and GFF3733 are separated by 12 nucleotides GFF3733 and GFF3734 overlap by 13 nucleotides GFF3734 and GFF3735 are separated by 14 nucleotides
GFF3731 - FIG00956224: hypothetical protein, at 631,172 to 631,681
GFF3731
GFF3732 - Maebl, at 632,075 to 632,215
GFF3732
GFF3733 - Maebl, at 632,228 to 632,539
GFF3733
GFF3734 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 632,527 to 632,895
GFF3734
GFF3735 - putative exported protein, at 632,910 to 633,896
GFF3735
Position (kb) 632
633 Strain fitness (log2 ratio) -2
-1
0
1 at 631.272 kb on + strand, within GFF3731 at 631.284 kb on + strand, within GFF3731 at 631.284 kb on + strand, within GFF3731 at 631.285 kb on - strand, within GFF3731 at 631.511 kb on + strand, within GFF3731 at 631.665 kb on + strand at 631.666 kb on - strand at 631.697 kb on + strand at 631.697 kb on + strand at 631.721 kb on + strand at 631.721 kb on + strand at 631.721 kb on + strand at 631.721 kb on + strand at 631.779 kb on + strand at 631.779 kb on + strand at 631.779 kb on + strand at 631.779 kb on + strand at 631.779 kb on + strand at 631.780 kb on - strand at 631.780 kb on - strand at 631.780 kb on - strand at 631.780 kb on - strand at 631.780 kb on - strand at 631.781 kb on - strand at 631.816 kb on + strand at 631.893 kb on + strand at 631.893 kb on + strand at 631.922 kb on + strand at 631.926 kb on + strand at 631.927 kb on - strand at 632.247 kb on + strand at 632.248 kb on - strand at 632.248 kb on - strand at 632.501 kb on + strand, within GFF3733 at 632.537 kb on + strand at 632.537 kb on + strand at 632.537 kb on + strand at 632.538 kb on - strand at 632.669 kb on + strand, within GFF3734 at 632.669 kb on + strand, within GFF3734 at 632.669 kb on + strand, within GFF3734 at 632.669 kb on + strand, within GFF3734 at 632.670 kb on - strand, within GFF3734 at 632.670 kb on - strand, within GFF3734 at 632.670 kb on - strand, within GFF3734 at 632.670 kb on - strand, within GFF3734 at 632.816 kb on + strand, within GFF3734 at 632.817 kb on - strand, within GFF3734 at 632.899 kb on + strand at 632.950 kb on + strand at 632.966 kb on - strand at 632.966 kb on - strand at 632.966 kb on - strand at 633.247 kb on - strand, within GFF3735 at 633.248 kb on - strand, within GFF3735 at 633.248 kb on - strand, within GFF3735 at 633.248 kb on - strand, within GFF3735 at 633.248 kb on - strand, within GFF3735 at 633.275 kb on - strand, within GFF3735 at 633.419 kb on - strand, within GFF3735
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 631,272 + GFF3731 0.20 +0.4 631,284 + GFF3731 0.22 -0.4 631,284 + GFF3731 0.22 -0.1 631,285 - GFF3731 0.22 -0.6 631,511 + GFF3731 0.66 -0.1 631,665 + -1.1 631,666 - +0.2 631,697 + -0.6 631,697 + +0.9 631,721 + -1.5 631,721 + +0.0 631,721 + -0.3 631,721 + -0.3 631,779 + +1.6 631,779 + +0.6 631,779 + +1.5 631,779 + -0.4 631,779 + +0.9 631,780 - +0.1 631,780 - +0.5 631,780 - +0.1 631,780 - +0.0 631,780 - +0.5 631,781 - -0.3 631,816 + +0.2 631,893 + +0.4 631,893 + -0.1 631,922 + +0.4 631,926 + -0.3 631,927 - +0.2 632,247 + -0.3 632,248 - -0.4 632,248 - -0.7 632,501 + GFF3733 0.88 -0.5 632,537 + -0.1 632,537 + +0.1 632,537 + -0.5 632,538 - -0.5 632,669 + GFF3734 0.38 -1.5 632,669 + GFF3734 0.38 +0.4 632,669 + GFF3734 0.38 -2.1 632,669 + GFF3734 0.38 -1.1 632,670 - GFF3734 0.39 +0.0 632,670 - GFF3734 0.39 -0.3 632,670 - GFF3734 0.39 -0.4 632,670 - GFF3734 0.39 -0.0 632,816 + GFF3734 0.78 +0.3 632,817 - GFF3734 0.79 +0.0 632,899 + -0.5 632,950 + -0.3 632,966 - +1.7 632,966 - -0.1 632,966 - +0.9 633,247 - GFF3735 0.34 -1.2 633,248 - GFF3735 0.34 +0.4 633,248 - GFF3735 0.34 +0.1 633,248 - GFF3735 0.34 -0.3 633,248 - GFF3735 0.34 -0.4 633,275 - GFF3735 0.37 -0.2 633,419 - GFF3735 0.52 +0.3
Or see this region's nucleotide sequence