Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3702 and GFF3703 overlap by 1 nucleotides GFF3703 and GFF3704 are separated by 167 nucleotides
GFF3702 - AttH component of AttEFGH ABC transport system, at 593,440 to 594,570
GFF3702
GFF3703 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 594,570 to 597,122
GFF3703
GFF3704 - Transglutaminase-like, at 597,290 to 598,171
GFF3704
Position (kb) 594
595
596
597
598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 593.975 kb on + strand, within GFF3702 at 593.976 kb on - strand, within GFF3702 at 593.976 kb on - strand, within GFF3702 at 594.102 kb on - strand, within GFF3702 at 594.401 kb on + strand, within GFF3702 at 594.401 kb on + strand, within GFF3702 at 594.402 kb on - strand, within GFF3702 at 595.330 kb on + strand, within GFF3703 at 595.331 kb on - strand, within GFF3703 at 595.591 kb on + strand, within GFF3703 at 595.591 kb on + strand, within GFF3703 at 595.591 kb on + strand, within GFF3703 at 595.591 kb on + strand, within GFF3703 at 595.591 kb on + strand, within GFF3703 at 595.592 kb on - strand, within GFF3703 at 595.592 kb on - strand, within GFF3703 at 595.592 kb on - strand, within GFF3703 at 595.861 kb on + strand, within GFF3703 at 595.861 kb on + strand, within GFF3703 at 595.862 kb on - strand, within GFF3703 at 595.862 kb on - strand, within GFF3703 at 595.862 kb on - strand, within GFF3703 at 595.862 kb on - strand, within GFF3703 at 596.122 kb on + strand, within GFF3703 at 596.389 kb on + strand, within GFF3703 at 596.389 kb on + strand, within GFF3703 at 597.187 kb on + strand at 597.324 kb on - strand at 597.602 kb on + strand, within GFF3704 at 597.602 kb on + strand, within GFF3704 at 597.602 kb on + strand, within GFF3704 at 597.602 kb on + strand, within GFF3704 at 597.603 kb on - strand, within GFF3704 at 597.603 kb on - strand, within GFF3704 at 597.603 kb on - strand, within GFF3704 at 597.608 kb on + strand, within GFF3704 at 597.609 kb on - strand, within GFF3704 at 597.609 kb on - strand, within GFF3704 at 597.609 kb on - strand, within GFF3704 at 597.609 kb on - strand, within GFF3704 at 597.620 kb on + strand, within GFF3704 at 597.917 kb on + strand, within GFF3704 at 597.917 kb on + strand, within GFF3704 at 597.917 kb on + strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.918 kb on - strand, within GFF3704 at 597.929 kb on + strand, within GFF3704 at 597.929 kb on + strand, within GFF3704 at 597.929 kb on + strand, within GFF3704 at 597.930 kb on - strand, within GFF3704 at 597.930 kb on - strand, within GFF3704 at 597.930 kb on - strand, within GFF3704 at 597.930 kb on - strand, within GFF3704 at 597.947 kb on + strand, within GFF3704 at 597.948 kb on - strand, within GFF3704
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 593,975 + GFF3702 0.47 -0.7 593,976 - GFF3702 0.47 -0.2 593,976 - GFF3702 0.47 -0.2 594,102 - GFF3702 0.59 +0.6 594,401 + GFF3702 0.85 +0.8 594,401 + GFF3702 0.85 +0.0 594,402 - GFF3702 0.85 -1.5 595,330 + GFF3703 0.30 +1.4 595,331 - GFF3703 0.30 +0.2 595,591 + GFF3703 0.40 +0.6 595,591 + GFF3703 0.40 +1.1 595,591 + GFF3703 0.40 -1.2 595,591 + GFF3703 0.40 +1.3 595,591 + GFF3703 0.40 -0.2 595,592 - GFF3703 0.40 +1.2 595,592 - GFF3703 0.40 -0.2 595,592 - GFF3703 0.40 +0.1 595,861 + GFF3703 0.51 +0.3 595,861 + GFF3703 0.51 -0.5 595,862 - GFF3703 0.51 +1.2 595,862 - GFF3703 0.51 +0.4 595,862 - GFF3703 0.51 +1.0 595,862 - GFF3703 0.51 -0.0 596,122 + GFF3703 0.61 +0.2 596,389 + GFF3703 0.71 +0.2 596,389 + GFF3703 0.71 -1.2 597,187 + +0.2 597,324 - +0.8 597,602 + GFF3704 0.35 +1.3 597,602 + GFF3704 0.35 +0.3 597,602 + GFF3704 0.35 -1.2 597,602 + GFF3704 0.35 -0.5 597,603 - GFF3704 0.35 -1.5 597,603 - GFF3704 0.35 +0.5 597,603 - GFF3704 0.35 +0.5 597,608 + GFF3704 0.36 -0.8 597,609 - GFF3704 0.36 -0.5 597,609 - GFF3704 0.36 -1.0 597,609 - GFF3704 0.36 -0.5 597,609 - GFF3704 0.36 -2.0 597,620 + GFF3704 0.37 -0.4 597,917 + GFF3704 0.71 +0.1 597,917 + GFF3704 0.71 -0.1 597,917 + GFF3704 0.71 +0.2 597,918 - GFF3704 0.71 +0.3 597,918 - GFF3704 0.71 -0.3 597,918 - GFF3704 0.71 -0.5 597,918 - GFF3704 0.71 +0.8 597,918 - GFF3704 0.71 +0.4 597,918 - GFF3704 0.71 +0.1 597,918 - GFF3704 0.71 -0.1 597,918 - GFF3704 0.71 -0.2 597,929 + GFF3704 0.72 +0.1 597,929 + GFF3704 0.72 +0.1 597,929 + GFF3704 0.72 +0.5 597,930 - GFF3704 0.73 -0.6 597,930 - GFF3704 0.73 -0.2 597,930 - GFF3704 0.73 +0.1 597,930 - GFF3704 0.73 +2.3 597,947 + GFF3704 0.74 -0.3 597,948 - GFF3704 0.75 -0.5
Or see this region's nucleotide sequence