Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3632 and GFF3633 are separated by 115 nucleotides GFF3633 and GFF3634 are separated by 140 nucleotides GFF3634 and GFF3635 are separated by 110 nucleotides GFF3635 and GFF3636 are separated by 64 nucleotides GFF3636 and GFF3637 are separated by 50 nucleotides GFF3637 and GFF3638 are separated by 142 nucleotides
GFF3632 - Regulator of nucleoside diphosphate kinase, at 518,460 to 518,861
GFF3632
GFF3633 - hypothetical protein, at 518,977 to 519,102
GFF3633
GFF3634 - hypothetical protein, at 519,243 to 519,449
GFF3634
GFF3635 - Nitrogen regulation protein NR(I), at 519,560 to 520,990
GFF3635
GFF3636 - hypothetical protein, at 521,055 to 521,291
GFF3636
GFF3637 - hypothetical protein, at 521,342 to 521,800
GFF3637
GFF3638 - sensory box histidine kinase/response regulator, at 521,943 to 523,790
GFF3638
Position (kb) 519
520
521 Strain fitness (log2 ratio) -2
-1
0
1 at 518.641 kb on + strand, within GFF3632 at 518.642 kb on - strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.701 kb on + strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.702 kb on - strand, within GFF3632 at 518.935 kb on + strand at 518.935 kb on + strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.936 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 518.979 kb on - strand at 519.109 kb on + strand at 519.109 kb on + strand at 519.110 kb on - strand at 519.110 kb on - strand at 519.851 kb on + strand, within GFF3635 at 519.851 kb on + strand, within GFF3635 at 520.014 kb on - strand, within GFF3635 at 520.610 kb on + strand, within GFF3635 at 520.661 kb on + strand, within GFF3635 at 520.661 kb on + strand, within GFF3635 at 520.661 kb on + strand, within GFF3635 at 520.877 kb on + strand at 520.877 kb on + strand at 520.877 kb on + strand at 520.877 kb on + strand at 520.934 kb on + strand at 520.934 kb on + strand at 520.935 kb on - strand at 520.953 kb on - strand at 521.859 kb on - strand at 521.881 kb on + strand at 521.881 kb on + strand at 521.888 kb on + strand at 521.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 518,641 + GFF3632 0.45 -0.8 518,642 - GFF3632 0.45 +1.3 518,701 + GFF3632 0.60 -0.0 518,701 + GFF3632 0.60 -1.2 518,702 - GFF3632 0.60 -2.0 518,702 - GFF3632 0.60 -0.4 518,935 + -0.7 518,935 + -0.1 518,936 - -0.0 518,936 - -0.9 518,936 - -0.1 518,936 - -0.3 518,979 - -1.0 518,979 - -1.1 518,979 - +1.5 518,979 - -0.2 519,109 + -0.5 519,109 + +0.0 519,110 - -0.7 519,110 - -0.2 519,851 + GFF3635 0.20 +0.4 519,851 + GFF3635 0.20 +0.5 520,014 - GFF3635 0.32 +1.1 520,610 + GFF3635 0.73 +0.0 520,661 + GFF3635 0.77 +0.1 520,661 + GFF3635 0.77 -1.1 520,661 + GFF3635 0.77 +0.5 520,877 + +0.1 520,877 + +1.4 520,877 + +0.3 520,877 + +0.4 520,934 + +0.4 520,934 + +0.2 520,935 - +1.2 520,953 - +0.7 521,859 - +0.8 521,881 + -0.0 521,881 + +0.5 521,888 + +0.1 521,889 - +0.6
Or see this region's nucleotide sequence