Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3593 and GFF3594 are separated by 5 nucleotides GFF3594 and GFF3595 are separated by 35 nucleotides GFF3595 and GFF3596 are separated by 124 nucleotides GFF3596 and GFF3597 are separated by 94 nucleotides GFF3597 and GFF3598 are separated by 3 nucleotides
GFF3593 - Autolysin sensor kinase (EC 2.7.3.-), at 480,773 to 481,855
GFF3593
GFF3594 - hypothetical protein, at 481,861 to 482,151
GFF3594
GFF3595 - membrane protein, putative, at 482,187 to 482,618
GFF3595
GFF3596 - Sensory box histidine kinase, at 482,743 to 484,617
GFF3596
GFF3597 - FIG00348902: hypothetical protein, at 484,712 to 485,581
GFF3597
GFF3598 - FIG00441227: hypothetical protein, at 485,585 to 486,412
GFF3598
Position (kb) 482
483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.756 kb on + strand at 481.756 kb on + strand at 481.994 kb on + strand, within GFF3594 at 481.994 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.076 kb on - strand, within GFF3594 at 482.230 kb on + strand at 482.281 kb on + strand, within GFF3595 at 482.282 kb on - strand, within GFF3595 at 482.428 kb on + strand, within GFF3595 at 482.474 kb on - strand, within GFF3595 at 482.990 kb on + strand, within GFF3596 at 483.398 kb on + strand, within GFF3596 at 483.398 kb on + strand, within GFF3596 at 483.404 kb on + strand, within GFF3596 at 483.404 kb on + strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.405 kb on - strand, within GFF3596 at 483.917 kb on + strand, within GFF3596 at 483.918 kb on - strand, within GFF3596 at 483.918 kb on - strand, within GFF3596 at 483.995 kb on + strand, within GFF3596 at 483.995 kb on + strand, within GFF3596 at 483.996 kb on - strand, within GFF3596 at 483.996 kb on - strand, within GFF3596 at 484.013 kb on + strand, within GFF3596 at 484.014 kb on - strand, within GFF3596 at 484.142 kb on + strand, within GFF3596 at 484.142 kb on + strand, within GFF3596 at 484.142 kb on + strand, within GFF3596 at 484.143 kb on - strand, within GFF3596 at 484.143 kb on - strand, within GFF3596 at 484.699 kb on - strand at 484.986 kb on + strand, within GFF3597 at 484.986 kb on + strand, within GFF3597 at 484.987 kb on - strand, within GFF3597 at 484.987 kb on - strand, within GFF3597 at 485.076 kb on + strand, within GFF3597 at 485.077 kb on - strand, within GFF3597 at 485.077 kb on - strand, within GFF3597 at 485.077 kb on - strand, within GFF3597 at 485.532 kb on + strand at 485.532 kb on + strand at 485.532 kb on + strand at 485.532 kb on + strand at 485.533 kb on - strand at 485.533 kb on - strand at 485.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 481,756 + +0.4 481,756 + -2.0 481,994 + GFF3594 0.46 -0.0 481,994 + GFF3594 0.46 -0.5 482,075 + GFF3594 0.74 -0.5 482,075 + GFF3594 0.74 +0.2 482,075 + GFF3594 0.74 -0.4 482,076 - GFF3594 0.74 -1.2 482,230 + -0.0 482,281 + GFF3595 0.22 +0.2 482,282 - GFF3595 0.22 -0.2 482,428 + GFF3595 0.56 +0.6 482,474 - GFF3595 0.66 -0.4 482,990 + GFF3596 0.13 +0.0 483,398 + GFF3596 0.35 +0.8 483,398 + GFF3596 0.35 +0.5 483,404 + GFF3596 0.35 +1.8 483,404 + GFF3596 0.35 +1.0 483,405 - GFF3596 0.35 +0.3 483,405 - GFF3596 0.35 +0.4 483,405 - GFF3596 0.35 +0.0 483,405 - GFF3596 0.35 -0.7 483,405 - GFF3596 0.35 -0.5 483,917 + GFF3596 0.63 +0.2 483,918 - GFF3596 0.63 +0.1 483,918 - GFF3596 0.63 +0.4 483,995 + GFF3596 0.67 +0.2 483,995 + GFF3596 0.67 +0.7 483,996 - GFF3596 0.67 +1.1 483,996 - GFF3596 0.67 -0.2 484,013 + GFF3596 0.68 +0.8 484,014 - GFF3596 0.68 +0.8 484,142 + GFF3596 0.75 +0.4 484,142 + GFF3596 0.75 +1.0 484,142 + GFF3596 0.75 +0.3 484,143 - GFF3596 0.75 -0.0 484,143 - GFF3596 0.75 -0.2 484,699 - +0.5 484,986 + GFF3597 0.31 +0.3 484,986 + GFF3597 0.31 -0.2 484,987 - GFF3597 0.32 +0.3 484,987 - GFF3597 0.32 +0.2 485,076 + GFF3597 0.42 -0.4 485,077 - GFF3597 0.42 -0.2 485,077 - GFF3597 0.42 +0.1 485,077 - GFF3597 0.42 +0.4 485,532 + +0.3 485,532 + +0.8 485,532 + -0.3 485,532 + -1.2 485,533 - +0.7 485,533 - -0.1 485,533 - +0.8
Or see this region's nucleotide sequence