Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3557 and GFF3558 are separated by 16 nucleotides GFF3558 and GFF3559 are separated by 10 nucleotides GFF3559 and GFF3560 are separated by 261 nucleotides
GFF3557 - Mlr1171 protein, at 449,016 to 449,588
GFF3557
GFF3558 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 449,605 to 450,381
GFF3558
GFF3559 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 450,392 to 451,039
GFF3559
GFF3560 - tRNA-dihydrouridine synthase C (EC 1.-.-.-), at 451,301 to 452,302
GFF3560
Position (kb) 450
451
452 Strain fitness (log2 ratio) -1
0
1
2 at 449.895 kb on - strand, within GFF3558 at 449.895 kb on - strand, within GFF3558 at 450.510 kb on + strand, within GFF3559 at 450.510 kb on + strand, within GFF3559 at 450.510 kb on + strand, within GFF3559 at 450.511 kb on - strand, within GFF3559 at 450.511 kb on - strand, within GFF3559 at 450.528 kb on - strand, within GFF3559 at 450.992 kb on + strand at 450.993 kb on - strand at 451.028 kb on + strand at 451.028 kb on + strand at 451.028 kb on + strand at 451.029 kb on - strand at 451.293 kb on + strand at 451.293 kb on + strand at 451.294 kb on - strand at 451.294 kb on - strand at 451.294 kb on - strand at 451.727 kb on + strand, within GFF3560 at 451.728 kb on - strand, within GFF3560 at 451.839 kb on - strand, within GFF3560 at 451.839 kb on - strand, within GFF3560
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 449,895 - GFF3558 0.37 +0.5 449,895 - GFF3558 0.37 -0.0 450,510 + GFF3559 0.18 -0.8 450,510 + GFF3559 0.18 -0.3 450,510 + GFF3559 0.18 -0.0 450,511 - GFF3559 0.18 +0.1 450,511 - GFF3559 0.18 -0.6 450,528 - GFF3559 0.21 +0.1 450,992 + -0.4 450,993 - +0.5 451,028 + -0.4 451,028 + -0.2 451,028 + +0.0 451,029 - -0.1 451,293 + -1.2 451,293 + +0.2 451,294 - -1.7 451,294 - +0.1 451,294 - +2.4 451,727 + GFF3560 0.43 -1.0 451,728 - GFF3560 0.43 +0.8 451,839 - GFF3560 0.54 -0.6 451,839 - GFF3560 0.54 +0.1
Or see this region's nucleotide sequence