Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3530

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3529 and GFF3530 are separated by 107 nucleotidesGFF3530 and GFF3531 are separated by 266 nucleotides GFF3529 - possible endonuclease/exonuclease/phosphatase family protein, at 416,441 to 417,448 GFF3529 GFF3530 - ATP-dependent RNA helicase RhlE, at 417,556 to 419,382 GFF3530 GFF3531 - ABC transporter, at 419,649 to 421,310 GFF3531 Position (kb) 417 418 419 420Strain fitness (log2 ratio) -2 -1 0 1 2at 417.240 kb on + strand, within GFF3529at 417.241 kb on - strand, within GFF3529at 417.378 kb on + strandat 417.396 kb on + strandat 417.460 kb on - strandat 417.540 kb on + strandat 417.540 kb on + strandat 417.541 kb on - strandat 417.541 kb on - strandat 417.541 kb on - strandat 417.572 kb on + strandat 417.573 kb on - strandat 418.350 kb on - strand, within GFF3530at 418.377 kb on - strand, within GFF3530at 419.342 kb on + strandat 419.342 kb on + strandat 419.342 kb on + strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.522 kb on + strandat 419.523 kb on - strandat 419.523 kb on - strandat 419.523 kb on - strandat 419.536 kb on - strandat 419.536 kb on - strandat 419.593 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.658 kb on + strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.659 kb on - strandat 419.865 kb on + strand, within GFF3531at 419.865 kb on + strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.866 kb on - strand, within GFF3531at 419.970 kb on + strand, within GFF3531at 419.971 kb on - strand, within GFF3531at 419.979 kb on + strand, within GFF3531at 419.980 kb on - strand, within GFF3531at 419.980 kb on - strand, within GFF3531at 420.259 kb on + strand, within GFF3531at 420.259 kb on + strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.260 kb on - strand, within GFF3531at 420.303 kb on + strand, within GFF3531at 420.303 kb on + strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.304 kb on - strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.363 kb on + strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.364 kb on - strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.375 kb on + strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531at 420.376 kb on - strand, within GFF3531

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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417,240 + GFF3529 0.79 -0.0
417,241 - GFF3529 0.79 +0.0
417,378 + +1.4
417,396 + +0.5
417,460 - -1.2
417,540 + +0.8
417,540 + -0.0
417,541 - -0.6
417,541 - +0.7
417,541 - +0.1
417,572 + +0.1
417,573 - +0.4
418,350 - GFF3530 0.43 -0.2
418,377 - GFF3530 0.45 -0.4
419,342 + +0.5
419,342 + -0.7
419,342 + +0.2
419,343 - -0.7
419,343 - +0.8
419,343 - -0.2
419,343 - +0.3
419,343 - +0.1
419,343 - -0.0
419,343 - -0.0
419,343 - +1.7
419,522 + +0.0
419,522 + +0.2
419,522 + -0.2
419,522 + +0.4
419,523 - +0.2
419,523 - -0.7
419,523 - +0.1
419,536 - +1.0
419,536 - -0.7
419,593 + -0.2
419,658 + -0.7
419,658 + -1.5
419,658 + -1.2
419,658 + -0.8
419,658 + -1.5
419,658 + -0.0
419,659 - -1.5
419,659 - -1.3
419,659 - -1.0
419,659 - -1.1
419,659 - -1.1
419,659 - -1.0
419,865 + GFF3531 0.13 -1.5
419,865 + GFF3531 0.13 -1.5
419,866 - GFF3531 0.13 +0.3
419,866 - GFF3531 0.13 -1.5
419,866 - GFF3531 0.13 -0.2
419,970 + GFF3531 0.19 -1.1
419,971 - GFF3531 0.19 -0.9
419,979 + GFF3531 0.20 -0.7
419,980 - GFF3531 0.20 -1.7
419,980 - GFF3531 0.20 -0.4
420,259 + GFF3531 0.37 -1.0
420,259 + GFF3531 0.37 -1.3
420,260 - GFF3531 0.37 -1.5
420,260 - GFF3531 0.37 -1.1
420,260 - GFF3531 0.37 -1.6
420,260 - GFF3531 0.37 +2.4
420,260 - GFF3531 0.37 -0.3
420,260 - GFF3531 0.37 -1.2
420,260 - GFF3531 0.37 -1.1
420,260 - GFF3531 0.37 -1.3
420,260 - GFF3531 0.37 -1.6
420,303 + GFF3531 0.39 -0.8
420,303 + GFF3531 0.39 -2.5
420,304 - GFF3531 0.39 -0.0
420,304 - GFF3531 0.39 -1.0
420,304 - GFF3531 0.39 -0.6
420,363 + GFF3531 0.43 -0.7
420,363 + GFF3531 0.43 -1.0
420,363 + GFF3531 0.43 -2.5
420,363 + GFF3531 0.43 -1.4
420,363 + GFF3531 0.43 -1.8
420,363 + GFF3531 0.43 -1.0
420,364 - GFF3531 0.43 +0.1
420,364 - GFF3531 0.43 -1.7
420,364 - GFF3531 0.43 -0.6
420,364 - GFF3531 0.43 -0.5
420,364 - GFF3531 0.43 -0.7
420,364 - GFF3531 0.43 -1.2
420,364 - GFF3531 0.43 -0.2
420,364 - GFF3531 0.43 -1.5
420,375 + GFF3531 0.44 -0.3
420,375 + GFF3531 0.44 -1.2
420,375 + GFF3531 0.44 -1.5
420,375 + GFF3531 0.44 +0.0
420,375 + GFF3531 0.44 -0.7
420,376 - GFF3531 0.44 -1.3
420,376 - GFF3531 0.44 -1.0
420,376 - GFF3531 0.44 -0.9
420,376 - GFF3531 0.44 -0.5
420,376 - GFF3531 0.44 -1.5
420,376 - GFF3531 0.44 +0.3

Or see this region's nucleotide sequence