Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3510

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3509 and GFF3510 are separated by 76 nucleotidesGFF3510 and GFF3511 are separated by 252 nucleotidesGFF3511 and GFF3512 are separated by 5 nucleotides GFF3509 - DNA circulation protein, putative, at 394,992 to 396,449 GFF3509 GFF3510 - FIG01198748: hypothetical protein, at 396,526 to 398,232 GFF3510 GFF3511 - Lactoylglutathione lyase (EC 4.4.1.5), at 398,485 to 398,931 GFF3511 GFF3512 - uncharacterized domain 1, at 398,937 to 399,479 GFF3512 Position (kb) 396 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2at 395.545 kb on - strand, within GFF3509at 395.647 kb on - strand, within GFF3509at 395.714 kb on + strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 396.013 kb on + strand, within GFF3509at 396.074 kb on - strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.103 kb on - strand, within GFF3509at 396.135 kb on + strand, within GFF3509at 396.136 kb on - strand, within GFF3509at 396.248 kb on + strand, within GFF3509at 396.249 kb on - strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.261 kb on - strand, within GFF3509at 396.319 kb on + strandat 396.320 kb on - strandat 396.330 kb on + strandat 396.331 kb on - strandat 396.399 kb on + strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.400 kb on - strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.455 kb on - strandat 396.474 kb on + strandat 396.528 kb on - strandat 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.741 kb on - strand, within GFF3510at 396.765 kb on - strand, within GFF3510at 396.777 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.888 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.080 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.171 kb on + strand, within GFF3510at 397.259 kb on + strand, within GFF3510at 397.260 kb on - strand, within GFF3510at 397.260 kb on - strand, within GFF3510at 397.579 kb on + strand, within GFF3510at 397.579 kb on + strand, within GFF3510at 397.599 kb on + strand, within GFF3510at 397.599 kb on + strand, within GFF3510at 397.600 kb on - strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.630 kb on + strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.631 kb on - strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.632 kb on + strand, within GFF3510at 397.633 kb on - strand, within GFF3510at 397.661 kb on + strand, within GFF3510at 397.661 kb on + strand, within GFF3510at 397.662 kb on - strand, within GFF3510at 397.662 kb on - strand, within GFF3510at 397.765 kb on + strand, within GFF3510at 397.765 kb on + strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.766 kb on - strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on + strand, within GFF3510at 397.767 kb on - strand, within GFF3510at 397.785 kb on - strand, within GFF3510at 398.167 kb on + strandat 398.270 kb on + strandat 398.271 kb on - strandat 398.271 kb on - strandat 398.271 kb on - strandat 398.323 kb on + strandat 398.324 kb on - strandat 398.344 kb on + strandat 398.345 kb on - strandat 398.487 kb on - strandat 398.541 kb on - strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.684 kb on + strand, within GFF3511at 398.685 kb on - strand, within GFF3511at 398.717 kb on + strand, within GFF3511at 398.717 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.735 kb on + strand, within GFF3511at 398.736 kb on - strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.756 kb on + strand, within GFF3511at 398.757 kb on - strand, within GFF3511at 398.757 kb on - strand, within GFF3511at 398.795 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.816 kb on + strand, within GFF3511at 398.817 kb on - strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.822 kb on + strand, within GFF3511at 398.823 kb on - strand, within GFF3511at 398.873 kb on + strand, within GFF3511at 398.920 kb on + strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.921 kb on - strandat 398.938 kb on + strandat 398.986 kb on + strandat 398.986 kb on + strandat 398.986 kb on + strandat 399.085 kb on + strand, within GFF3512at 399.085 kb on + strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.086 kb on - strand, within GFF3512at 399.130 kb on + strand, within GFF3512at 399.130 kb on + strand, within GFF3512at 399.131 kb on - strand, within GFF3512at 399.197 kb on - strand, within GFF3512at 399.230 kb on - strand, within GFF3512at 399.230 kb on - strand, within GFF3512

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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395,545 - GFF3509 0.38 +0.1
395,647 - GFF3509 0.45 -0.6
395,714 + GFF3509 0.50 +0.4
395,715 - GFF3509 0.50 -0.2
395,715 - GFF3509 0.50 -0.4
395,715 - GFF3509 0.50 +0.5
395,760 + GFF3509 0.53 +0.3
395,760 + GFF3509 0.53 +0.2
395,760 + GFF3509 0.53 +0.1
395,760 + GFF3509 0.53 -0.0
395,761 - GFF3509 0.53 +1.0
395,761 - GFF3509 0.53 +0.6
396,013 + GFF3509 0.70 -0.2
396,074 - GFF3509 0.74 +0.1
396,102 + GFF3509 0.76 -0.0
396,102 + GFF3509 0.76 +0.3
396,102 + GFF3509 0.76 -0.6
396,103 - GFF3509 0.76 -0.0
396,135 + GFF3509 0.78 -0.5
396,136 - GFF3509 0.78 -0.9
396,248 + GFF3509 0.86 +0.8
396,249 - GFF3509 0.86 -0.7
396,260 + GFF3509 0.87 +0.4
396,260 + GFF3509 0.87 +0.3
396,261 - GFF3509 0.87 -0.4
396,319 + +0.7
396,320 - +0.1
396,330 + -1.2
396,331 - +0.3
396,399 + -0.3
396,399 + -0.6
396,400 - -0.2
396,400 - -0.5
396,426 + -0.0
396,426 + -0.3
396,426 + -0.4
396,426 + +0.8
396,426 + +0.3
396,426 + -1.0
396,427 - +0.3
396,427 - +0.4
396,427 - -0.1
396,427 - -0.2
396,427 - +0.3
396,455 - +0.7
396,474 + +0.3
396,528 - -1.2
396,740 + GFF3510 0.13 -0.1
396,740 + GFF3510 0.13 -0.3
396,740 + GFF3510 0.13 +0.5
396,741 - GFF3510 0.13 +0.4
396,765 - GFF3510 0.14 +0.2
396,777 + GFF3510 0.15 -0.2
396,887 + GFF3510 0.21 +0.4
396,887 + GFF3510 0.21 -1.0
396,887 + GFF3510 0.21 +0.5
396,888 - GFF3510 0.21 -0.2
397,001 - GFF3510 0.28 -0.1
397,001 - GFF3510 0.28 -0.3
397,001 - GFF3510 0.28 -0.1
397,079 + GFF3510 0.32 +1.4
397,079 + GFF3510 0.32 -0.7
397,080 - GFF3510 0.32 +0.3
397,149 - GFF3510 0.36 +0.1
397,149 - GFF3510 0.36 +0.5
397,171 + GFF3510 0.38 +0.6
397,259 + GFF3510 0.43 +0.6
397,260 - GFF3510 0.43 +0.4
397,260 - GFF3510 0.43 -0.2
397,579 + GFF3510 0.62 -0.1
397,579 + GFF3510 0.62 -0.5
397,599 + GFF3510 0.63 -0.3
397,599 + GFF3510 0.63 +0.8
397,600 - GFF3510 0.63 -0.5
397,630 + GFF3510 0.65 +0.1
397,630 + GFF3510 0.65 +0.3
397,630 + GFF3510 0.65 +0.6
397,630 + GFF3510 0.65 +1.0
397,630 + GFF3510 0.65 +0.4
397,630 + GFF3510 0.65 -0.3
397,630 + GFF3510 0.65 -0.0
397,630 + GFF3510 0.65 +0.2
397,630 + GFF3510 0.65 +0.0
397,630 + GFF3510 0.65 +0.8
397,631 - GFF3510 0.65 +0.1
397,631 - GFF3510 0.65 +0.4
397,631 - GFF3510 0.65 +0.8
397,631 - GFF3510 0.65 +0.0
397,631 - GFF3510 0.65 -0.6
397,631 - GFF3510 0.65 +0.4
397,631 - GFF3510 0.65 +0.2
397,631 - GFF3510 0.65 -0.0
397,632 + GFF3510 0.65 -0.8
397,632 + GFF3510 0.65 -0.1
397,632 + GFF3510 0.65 +0.1
397,633 - GFF3510 0.65 +0.0
397,661 + GFF3510 0.66 +0.2
397,661 + GFF3510 0.66 -0.6
397,662 - GFF3510 0.67 -0.2
397,662 - GFF3510 0.67 +0.1
397,765 + GFF3510 0.73 +0.3
397,765 + GFF3510 0.73 +2.1
397,766 - GFF3510 0.73 -0.2
397,766 - GFF3510 0.73 -0.1
397,766 - GFF3510 0.73 -0.5
397,766 - GFF3510 0.73 +0.8
397,767 + GFF3510 0.73 +0.6
397,767 + GFF3510 0.73 +0.0
397,767 + GFF3510 0.73 +0.5
397,767 - GFF3510 0.73 -0.4
397,785 - GFF3510 0.74 +0.0
398,167 + +0.1
398,270 + +0.5
398,271 - -1.7
398,271 - +0.3
398,271 - +0.8
398,323 + -2.3
398,324 - +0.0
398,344 + +0.2
398,345 - -0.4
398,487 - -0.5
398,541 - GFF3511 0.13 -0.7
398,684 + GFF3511 0.45 -0.0
398,684 + GFF3511 0.45 -0.2
398,684 + GFF3511 0.45 +0.8
398,685 - GFF3511 0.45 -0.4
398,717 + GFF3511 0.52 -0.2
398,717 + GFF3511 0.52 -0.4
398,735 + GFF3511 0.56 -0.6
398,735 + GFF3511 0.56 -0.0
398,735 + GFF3511 0.56 +0.0
398,736 - GFF3511 0.56 -0.3
398,756 + GFF3511 0.61 -0.0
398,756 + GFF3511 0.61 -0.0
398,756 + GFF3511 0.61 +0.4
398,756 + GFF3511 0.61 -0.2
398,756 + GFF3511 0.61 -0.1
398,757 - GFF3511 0.61 -0.2
398,757 - GFF3511 0.61 -0.4
398,795 + GFF3511 0.69 -0.7
398,816 + GFF3511 0.74 +0.3
398,816 + GFF3511 0.74 +0.6
398,816 + GFF3511 0.74 +0.7
398,817 - GFF3511 0.74 +0.1
398,822 + GFF3511 0.75 -0.5
398,822 + GFF3511 0.75 -0.1
398,822 + GFF3511 0.75 +0.3
398,823 - GFF3511 0.76 -0.4
398,873 + GFF3511 0.87 +0.9
398,920 + -0.2
398,921 - +0.8
398,921 - -1.9
398,921 - +0.7
398,921 - +0.5
398,921 - -0.2
398,921 - -0.2
398,921 - -1.2
398,938 + -0.1
398,986 + -0.6
398,986 + -0.3
398,986 + +0.1
399,085 + GFF3512 0.27 +0.6
399,085 + GFF3512 0.27 -0.0
399,086 - GFF3512 0.27 +0.8
399,086 - GFF3512 0.27 +0.3
399,086 - GFF3512 0.27 -0.7
399,130 + GFF3512 0.36 +0.6
399,130 + GFF3512 0.36 +0.5
399,131 - GFF3512 0.36 +0.3
399,197 - GFF3512 0.48 -0.0
399,230 - GFF3512 0.54 +0.2
399,230 - GFF3512 0.54 +0.9

Or see this region's nucleotide sequence