Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3377 and GFF3378 are separated by 12 nucleotides GFF3378 and GFF3379 are separated by 125 nucleotides GFF3379 and GFF3380 are separated by 85 nucleotides GFF3380 and GFF3381 overlap by 17 nucleotides GFF3381 and GFF3382 overlap by 18 nucleotides
GFF3377 - SoxH protein, homolog, at 262,188 to 263,057
GFF3377
GFF3378 - transcriptional regulator, XRE family, at 263,070 to 263,885
GFF3378
GFF3379 - putative integral membrane protein, at 264,011 to 264,424
GFF3379
GFF3380 - hypothetical protein, at 264,510 to 264,668
GFF3380
GFF3381 - hypothetical protein, at 264,652 to 264,768
GFF3381
GFF3382 - Aconitate hydratase (EC 4.2.1.3), at 264,751 to 267,615
GFF3382
Position (kb) 264
265 Strain fitness (log2 ratio) -1
0
1 at 263.635 kb on + strand, within GFF3378 at 263.635 kb on + strand, within GFF3378 at 263.648 kb on - strand, within GFF3378 at 263.755 kb on + strand, within GFF3378 at 263.889 kb on - strand at 264.127 kb on + strand, within GFF3379 at 264.128 kb on - strand, within GFF3379 at 264.185 kb on + strand, within GFF3379 at 264.334 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.336 kb on - strand, within GFF3379 at 264.467 kb on - strand at 264.695 kb on + strand, within GFF3381 at 264.696 kb on - strand, within GFF3381 at 264.696 kb on - strand, within GFF3381 at 264.835 kb on + strand at 264.835 kb on + strand at 265.238 kb on - strand, within GFF3382 at 265.327 kb on + strand, within GFF3382 at 265.327 kb on + strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.367 kb on - strand, within GFF3382 at 265.367 kb on - strand, within GFF3382
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 263,635 + GFF3378 0.69 -0.3 263,635 + GFF3378 0.69 -1.2 263,648 - GFF3378 0.71 -0.4 263,755 + GFF3378 0.84 -0.4 263,889 - -1.4 264,127 + GFF3379 0.28 +0.8 264,128 - GFF3379 0.28 +0.8 264,185 + GFF3379 0.42 +0.8 264,334 + GFF3379 0.78 -0.2 264,335 + GFF3379 0.78 +0.3 264,335 + GFF3379 0.78 +0.0 264,335 + GFF3379 0.78 +0.5 264,336 - GFF3379 0.79 +0.6 264,467 - +0.8 264,695 + GFF3381 0.37 -0.7 264,696 - GFF3381 0.38 +0.6 264,696 - GFF3381 0.38 -0.1 264,835 + -0.6 264,835 + +0.8 265,238 - GFF3382 0.17 +1.6 265,327 + GFF3382 0.20 -0.3 265,327 + GFF3382 0.20 -0.7 265,328 - GFF3382 0.20 -0.4 265,328 - GFF3382 0.20 -0.2 265,328 - GFF3382 0.20 +0.8 265,328 - GFF3382 0.20 -0.9 265,363 + GFF3382 0.21 -0.7 265,363 + GFF3382 0.21 -0.2 265,363 + GFF3382 0.21 -0.2 265,363 + GFF3382 0.21 +0.3 265,363 + GFF3382 0.21 +1.3 265,363 + GFF3382 0.21 -1.0 265,363 + GFF3382 0.21 -0.1 265,363 + GFF3382 0.21 -1.7 265,364 - GFF3382 0.21 +0.1 265,364 - GFF3382 0.21 -0.1 265,364 - GFF3382 0.21 +0.3 265,364 - GFF3382 0.21 -0.2 265,364 - GFF3382 0.21 +0.1 265,367 - GFF3382 0.22 +1.3 265,367 - GFF3382 0.22 +0.1
Or see this region's nucleotide sequence