Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3278 and GFF3279 are separated by 312 nucleotides GFF3279 and GFF3280 are separated by 135 nucleotides GFF3280 and GFF3281 are separated by 18 nucleotides
GFF3278 - Urea ABC transporter, ATPase protein UrtD, at 163,347 to 164,222
GFF3278
GFF3279 - Urea ABC transporter, ATPase protein UrtE, at 164,535 to 165,233
GFF3279
GFF3280 - hypothetical protein, at 165,369 to 165,575
GFF3280
GFF3281 - Tricarboxylate transport protein TctC, at 165,594 to 166,586
GFF3281
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 164.208 kb on + strand at 164.534 kb on + strand at 164.534 kb on + strand at 164.534 kb on + strand at 164.534 kb on + strand at 164.534 kb on + strand at 164.535 kb on - strand at 164.571 kb on + strand at 164.571 kb on + strand at 165.114 kb on + strand, within GFF3279 at 165.115 kb on - strand, within GFF3279 at 165.144 kb on + strand, within GFF3279 at 165.429 kb on + strand, within GFF3280 at 165.454 kb on - strand, within GFF3280 at 165.498 kb on + strand, within GFF3280 at 165.564 kb on + strand at 165.564 kb on + strand at 165.958 kb on + strand, within GFF3281 at 165.959 kb on - strand, within GFF3281 at 165.961 kb on + strand, within GFF3281 at 165.962 kb on - strand, within GFF3281 at 166.099 kb on + strand, within GFF3281 at 166.100 kb on - strand, within GFF3281
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 164,208 + -0.5 164,534 + +0.0 164,534 + -0.2 164,534 + +0.5 164,534 + +0.8 164,534 + -0.0 164,535 - -0.3 164,571 + +0.1 164,571 + -1.5 165,114 + GFF3279 0.83 +0.5 165,115 - GFF3279 0.83 +0.5 165,144 + GFF3279 0.87 +0.0 165,429 + GFF3280 0.29 -0.1 165,454 - GFF3280 0.41 +0.5 165,498 + GFF3280 0.62 -0.5 165,564 + +0.2 165,564 + -0.2 165,958 + GFF3281 0.37 +0.2 165,959 - GFF3281 0.37 +0.1 165,961 + GFF3281 0.37 +0.1 165,962 - GFF3281 0.37 -0.4 166,099 + GFF3281 0.51 +0.2 166,100 - GFF3281 0.51 +1.7
Or see this region's nucleotide sequence