Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3252 and GFF3253 overlap by 4 nucleotides GFF3253 and GFF3254 are separated by 25 nucleotides GFF3254 and GFF3255 overlap by 4 nucleotides GFF3255 and GFF3256 overlap by 4 nucleotides
GFF3252 - Serine/threonine protein kinase (EC 2.7.11.1), at 134,548 to 135,555
GFF3252
GFF3253 - Protein phosphatase 2C-like, at 135,552 to 136,451
GFF3253
GFF3254 - Ribonuclease PH (EC 2.7.7.56), at 136,477 to 137,199
GFF3254
GFF3255 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 137,196 to 137,819
GFF3255
GFF3256 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 137,816 to 139,093
GFF3256
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 135.567 kb on + strand at 135.567 kb on + strand at 135.568 kb on - strand at 135.568 kb on - strand at 135.618 kb on + strand at 135.619 kb on - strand at 135.619 kb on - strand at 135.624 kb on + strand at 135.624 kb on + strand at 135.624 kb on + strand at 135.624 kb on + strand at 135.624 kb on + strand at 135.624 kb on + strand at 135.625 kb on - strand at 135.625 kb on - strand at 135.625 kb on - strand at 135.723 kb on + strand, within GFF3253 at 135.723 kb on + strand, within GFF3253 at 135.724 kb on - strand, within GFF3253 at 135.724 kb on - strand, within GFF3253 at 135.724 kb on - strand, within GFF3253 at 135.813 kb on + strand, within GFF3253 at 135.918 kb on + strand, within GFF3253 at 135.918 kb on + strand, within GFF3253 at 135.919 kb on - strand, within GFF3253 at 135.919 kb on - strand, within GFF3253 at 135.919 kb on - strand, within GFF3253 at 135.966 kb on + strand, within GFF3253 at 135.966 kb on + strand, within GFF3253 at 135.966 kb on + strand, within GFF3253 at 135.966 kb on + strand, within GFF3253 at 135.967 kb on - strand, within GFF3253 at 135.967 kb on - strand, within GFF3253 at 135.967 kb on - strand, within GFF3253 at 135.967 kb on - strand, within GFF3253 at 135.967 kb on - strand, within GFF3253 at 136.477 kb on - strand at 136.537 kb on + strand at 136.537 kb on + strand at 136.537 kb on + strand at 136.537 kb on + strand at 136.538 kb on - strand at 136.666 kb on + strand, within GFF3254 at 136.880 kb on - strand, within GFF3254 at 137.008 kb on + strand, within GFF3254 at 137.008 kb on + strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.009 kb on - strand, within GFF3254 at 137.451 kb on + strand, within GFF3255 at 137.451 kb on + strand, within GFF3255 at 137.455 kb on - strand, within GFF3255 at 137.455 kb on - strand, within GFF3255 at 137.676 kb on + strand, within GFF3255 at 137.676 kb on + strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.677 kb on - strand, within GFF3255 at 137.960 kb on + strand, within GFF3256 at 137.960 kb on + strand, within GFF3256 at 137.961 kb on - strand, within GFF3256
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 135,567 + -1.0 135,567 + -0.2 135,568 - +0.4 135,568 - +0.5 135,618 + -0.2 135,619 - -1.4 135,619 - -0.6 135,624 + -1.2 135,624 + -1.3 135,624 + -0.5 135,624 + -0.8 135,624 + -1.5 135,624 + -0.0 135,625 - -1.1 135,625 - +0.5 135,625 - -2.2 135,723 + GFF3253 0.19 -1.3 135,723 + GFF3253 0.19 -0.5 135,724 - GFF3253 0.19 -0.9 135,724 - GFF3253 0.19 -2.0 135,724 - GFF3253 0.19 -0.2 135,813 + GFF3253 0.29 -0.9 135,918 + GFF3253 0.41 +0.2 135,918 + GFF3253 0.41 -1.6 135,919 - GFF3253 0.41 -0.2 135,919 - GFF3253 0.41 -1.8 135,919 - GFF3253 0.41 -0.5 135,966 + GFF3253 0.46 +0.6 135,966 + GFF3253 0.46 -1.3 135,966 + GFF3253 0.46 -0.7 135,966 + GFF3253 0.46 -1.4 135,967 - GFF3253 0.46 -0.8 135,967 - GFF3253 0.46 -0.2 135,967 - GFF3253 0.46 -1.4 135,967 - GFF3253 0.46 -0.8 135,967 - GFF3253 0.46 -1.1 136,477 - -0.6 136,537 + +0.5 136,537 + +0.0 136,537 + +0.3 136,537 + -0.0 136,538 - -0.1 136,666 + GFF3254 0.26 +2.0 136,880 - GFF3254 0.56 +0.3 137,008 + GFF3254 0.73 -0.2 137,008 + GFF3254 0.73 +1.0 137,009 - GFF3254 0.74 +0.8 137,009 - GFF3254 0.74 -1.5 137,009 - GFF3254 0.74 -0.5 137,009 - GFF3254 0.74 +1.1 137,451 + GFF3255 0.41 +0.4 137,451 + GFF3255 0.41 -1.2 137,455 - GFF3255 0.42 -1.2 137,455 - GFF3255 0.42 -0.5 137,676 + GFF3255 0.77 +0.6 137,676 + GFF3255 0.77 -0.9 137,677 - GFF3255 0.77 +0.1 137,677 - GFF3255 0.77 +0.5 137,677 - GFF3255 0.77 -0.3 137,960 + GFF3256 0.11 -0.1 137,960 + GFF3256 0.11 -0.7 137,961 - GFF3256 0.11 -1.8
Or see this region's nucleotide sequence