Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3106

Experiment: Ying_Others16 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3104 and GFF3105 are separated by 172 nucleotidesGFF3105 and GFF3106 are separated by 60 nucleotidesGFF3106 and GFF3107 overlap by 4 nucleotidesGFF3107 and GFF3108 overlap by 4 nucleotides GFF3104 - FIG026291: Hypothetical periplasmic protein, at 181,465 to 182,040 GFF3104 GFF3105 - hypothetical protein, at 182,213 to 182,407 GFF3105 GFF3106 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 182,468 to 183,967 GFF3106 GFF3107 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 183,964 to 184,554 GFF3107 GFF3108 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 184,551 to 185,618 GFF3108 Position (kb) 182 183 184Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.547 kb on + strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.548 kb on - strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.862 kb on + strand, within GFF3104at 181.863 kb on - strand, within GFF3104at 181.878 kb on - strand, within GFF3104at 181.878 kb on - strand, within GFF3104at 181.898 kb on + strand, within GFF3104at 182.164 kb on + strandat 182.215 kb on - strandat 182.310 kb on + strand, within GFF3105at 182.310 kb on + strand, within GFF3105at 182.310 kb on + strand, within GFF3105at 182.311 kb on - strand, within GFF3105at 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.510 kb on + strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.511 kb on - strandat 182.570 kb on + strandat 182.571 kb on - strandat 182.654 kb on + strand, within GFF3106at 182.855 kb on + strand, within GFF3106at 182.856 kb on - strand, within GFF3106at 182.856 kb on - strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.993 kb on + strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 182.994 kb on - strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.005 kb on + strand, within GFF3106at 183.006 kb on - strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.032 kb on + strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.033 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.081 kb on - strand, within GFF3106at 183.153 kb on - strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.239 kb on + strand, within GFF3106at 183.263 kb on + strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.297 kb on - strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.302 kb on + strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.303 kb on - strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.305 kb on + strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.306 kb on - strand, within GFF3106at 183.587 kb on + strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.588 kb on - strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.755 kb on + strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.756 kb on - strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.773 kb on + strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.774 kb on - strand, within GFF3106at 183.782 kb on + strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.783 kb on - strand, within GFF3106at 183.845 kb on + strandat 183.845 kb on + strandat 183.845 kb on + strandat 183.846 kb on - strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.997 kb on + strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 183.998 kb on - strandat 184.027 kb on + strand, within GFF3107at 184.027 kb on + strand, within GFF3107at 184.028 kb on - strand, within GFF3107at 184.559 kb on - strandat 184.782 kb on + strand, within GFF3108at 184.782 kb on + strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.783 kb on - strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.809 kb on + strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.810 kb on - strand, within GFF3108at 184.815 kb on + strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108at 184.816 kb on - strand, within GFF3108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
remove
181,547 + GFF3104 0.14 -1.3
181,547 + GFF3104 0.14 +0.4
181,547 + GFF3104 0.14 +0.8
181,547 + GFF3104 0.14 +0.2
181,548 - GFF3104 0.14 +0.8
181,548 - GFF3104 0.14 -0.3
181,548 - GFF3104 0.14 +0.2
181,548 - GFF3104 0.14 -0.4
181,548 - GFF3104 0.14 +1.0
181,862 + GFF3104 0.69 -0.1
181,862 + GFF3104 0.69 +0.5
181,862 + GFF3104 0.69 +0.6
181,862 + GFF3104 0.69 +0.4
181,863 - GFF3104 0.69 -0.0
181,878 - GFF3104 0.72 +0.0
181,878 - GFF3104 0.72 -1.8
181,898 + GFF3104 0.75 -1.0
182,164 + +0.3
182,215 - +1.0
182,310 + GFF3105 0.50 -0.6
182,310 + GFF3105 0.50 -0.6
182,310 + GFF3105 0.50 -0.5
182,311 - GFF3105 0.50 +0.4
182,510 + -0.0
182,510 + -4.5
182,510 + -6.2
182,510 + -4.4
182,510 + -4.0
182,511 - -5.2
182,511 - -3.3
182,511 - -1.6
182,511 - -2.5
182,570 + -1.6
182,571 - -2.9
182,654 + GFF3106 0.12 -3.3
182,855 + GFF3106 0.26 -2.0
182,856 - GFF3106 0.26 -4.1
182,856 - GFF3106 0.26 -2.2
182,993 + GFF3106 0.35 -6.0
182,993 + GFF3106 0.35 -3.0
182,993 + GFF3106 0.35 -3.3
182,993 + GFF3106 0.35 -4.4
182,993 + GFF3106 0.35 -4.0
182,994 - GFF3106 0.35 -5.6
182,994 - GFF3106 0.35 -3.1
182,994 - GFF3106 0.35 -2.5
182,994 - GFF3106 0.35 -1.6
182,994 - GFF3106 0.35 -2.6
183,005 + GFF3106 0.36 -5.2
183,005 + GFF3106 0.36 -1.3
183,006 - GFF3106 0.36 -4.8
183,032 + GFF3106 0.38 -2.0
183,032 + GFF3106 0.38 -2.2
183,032 + GFF3106 0.38 -2.8
183,032 + GFF3106 0.38 -3.7
183,032 + GFF3106 0.38 -2.5
183,033 - GFF3106 0.38 -1.3
183,033 - GFF3106 0.38 -3.7
183,033 - GFF3106 0.38 -3.0
183,081 - GFF3106 0.41 -3.1
183,081 - GFF3106 0.41 -5.7
183,081 - GFF3106 0.41 -5.4
183,081 - GFF3106 0.41 -2.0
183,081 - GFF3106 0.41 -2.6
183,153 - GFF3106 0.46 -0.0
183,239 + GFF3106 0.51 -3.1
183,239 + GFF3106 0.51 -6.3
183,239 + GFF3106 0.51 -5.8
183,239 + GFF3106 0.51 -1.3
183,239 + GFF3106 0.51 -4.9
183,263 + GFF3106 0.53 -2.6
183,297 - GFF3106 0.55 -4.4
183,297 - GFF3106 0.55 -2.7
183,297 - GFF3106 0.55 -5.2
183,297 - GFF3106 0.55 -2.3
183,297 - GFF3106 0.55 -2.6
183,297 - GFF3106 0.55 -5.0
183,297 - GFF3106 0.55 -5.4
183,302 + GFF3106 0.56 -1.3
183,302 + GFF3106 0.56 -5.5
183,302 + GFF3106 0.56 -3.3
183,302 + GFF3106 0.56 -4.2
183,302 + GFF3106 0.56 -0.6
183,302 + GFF3106 0.56 -4.0
183,302 + GFF3106 0.56 -5.0
183,302 + GFF3106 0.56 -3.6
183,302 + GFF3106 0.56 -5.9
183,302 + GFF3106 0.56 -2.2
183,302 + GFF3106 0.56 -2.0
183,302 + GFF3106 0.56 -4.0
183,302 + GFF3106 0.56 -4.7
183,303 - GFF3106 0.56 -2.0
183,303 - GFF3106 0.56 -5.0
183,303 - GFF3106 0.56 -1.6
183,303 - GFF3106 0.56 -2.8
183,303 - GFF3106 0.56 -2.9
183,303 - GFF3106 0.56 -4.3
183,303 - GFF3106 0.56 -1.8
183,303 - GFF3106 0.56 -4.9
183,303 - GFF3106 0.56 -1.3
183,303 - GFF3106 0.56 -4.3
183,303 - GFF3106 0.56 -2.9
183,303 - GFF3106 0.56 -5.3
183,305 + GFF3106 0.56 -3.3
183,305 + GFF3106 0.56 -2.7
183,305 + GFF3106 0.56 -4.1
183,305 + GFF3106 0.56 -2.8
183,305 + GFF3106 0.56 -3.4
183,305 + GFF3106 0.56 -2.0
183,305 + GFF3106 0.56 -4.6
183,306 - GFF3106 0.56 -1.3
183,306 - GFF3106 0.56 -2.2
183,306 - GFF3106 0.56 -3.2
183,306 - GFF3106 0.56 -3.5
183,306 - GFF3106 0.56 -1.0
183,306 - GFF3106 0.56 -1.0
183,306 - GFF3106 0.56 -2.0
183,587 + GFF3106 0.75 -3.1
183,588 - GFF3106 0.75 -4.3
183,588 - GFF3106 0.75 -1.0
183,755 + GFF3106 0.86 -0.6
183,755 + GFF3106 0.86 -2.5
183,756 - GFF3106 0.86 -3.2
183,756 - GFF3106 0.86 -5.9
183,756 - GFF3106 0.86 -1.6
183,773 + GFF3106 0.87 -3.6
183,773 + GFF3106 0.87 -5.3
183,774 - GFF3106 0.87 -7.0
183,774 - GFF3106 0.87 -4.2
183,782 + GFF3106 0.88 -3.7
183,783 - GFF3106 0.88 -1.3
183,783 - GFF3106 0.88 -5.6
183,845 + -5.8
183,845 + -2.2
183,845 + -4.9
183,846 - -4.8
183,997 + -2.9
183,997 + -3.7
183,997 + -1.8
183,997 + -1.0
183,998 - -3.1
183,998 - -1.6
183,998 - -1.8
183,998 - -6.7
184,027 + GFF3107 0.11 -4.1
184,027 + GFF3107 0.11 -2.6
184,028 - GFF3107 0.11 -4.4
184,559 - -2.7
184,782 + GFF3108 0.22 +1.0
184,782 + GFF3108 0.22 -0.2
184,783 - GFF3108 0.22 +0.2
184,783 - GFF3108 0.22 +0.1
184,809 + GFF3108 0.24 -1.4
184,809 + GFF3108 0.24 -1.3
184,809 + GFF3108 0.24 +1.0
184,809 + GFF3108 0.24 +0.1
184,810 - GFF3108 0.24 -0.0
184,810 - GFF3108 0.24 +0.3
184,810 - GFF3108 0.24 +0.5
184,810 - GFF3108 0.24 -0.2
184,815 + GFF3108 0.25 -1.4
184,816 - GFF3108 0.25 +0.4
184,816 - GFF3108 0.25 -0.0
184,816 - GFF3108 0.25 -1.4

Or see this region's nucleotide sequence