Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3063 and GFF3064 overlap by 1 nucleotides GFF3064 and GFF3065 are separated by 73 nucleotides GFF3065 and GFF3066 are separated by 271 nucleotides GFF3066 and GFF3067 overlap by 4 nucleotides
GFF3063 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 142,756 to 144,429
GFF3063
GFF3064 - Probable cell division ftsn transmembrane protein, at 144,429 to 145,139
GFF3064
GFF3065 - Periplasmic thiol:disulfide interchange protein DsbA, at 145,213 to 145,863
GFF3065
GFF3066 - LptA, protein essential for LPS transport across the periplasm, at 146,135 to 146,608
GFF3066
GFF3067 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 146,605 to 147,402
GFF3067
Position (kb) 145
146 Strain fitness (log2 ratio) -1
0
1 at 144.550 kb on - strand, within GFF3064 at 144.550 kb on - strand, within GFF3064 at 144.912 kb on + strand, within GFF3064 at 144.912 kb on + strand, within GFF3064 at 144.913 kb on - strand, within GFF3064 at 144.913 kb on - strand, within GFF3064 at 145.032 kb on + strand, within GFF3064 at 145.032 kb on + strand, within GFF3064 at 145.408 kb on + strand, within GFF3065 at 145.408 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.475 kb on - strand, within GFF3065 at 145.475 kb on - strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.538 kb on - strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.748 kb on - strand, within GFF3065 at 145.789 kb on + strand, within GFF3065 at 145.790 kb on - strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 144,550 - GFF3064 0.17 -0.6 144,550 - GFF3064 0.17 -0.0 144,912 + GFF3064 0.68 +0.5 144,912 + GFF3064 0.68 +0.4 144,913 - GFF3064 0.68 +0.2 144,913 - GFF3064 0.68 -0.5 145,032 + GFF3064 0.85 -0.2 145,032 + GFF3064 0.85 -0.1 145,408 + GFF3065 0.30 +0.6 145,408 + GFF3065 0.30 +1.0 145,474 + GFF3065 0.40 +1.7 145,474 + GFF3065 0.40 +0.2 145,474 + GFF3065 0.40 +0.6 145,474 + GFF3065 0.40 -1.4 145,474 + GFF3065 0.40 -0.8 145,474 + GFF3065 0.40 +0.8 145,474 + GFF3065 0.40 -0.8 145,475 - GFF3065 0.40 +0.1 145,475 - GFF3065 0.40 -0.0 145,537 + GFF3065 0.50 +0.5 145,537 + GFF3065 0.50 +0.4 145,537 + GFF3065 0.50 -0.8 145,537 + GFF3065 0.50 +0.9 145,537 + GFF3065 0.50 +0.4 145,537 + GFF3065 0.50 +0.4 145,538 - GFF3065 0.50 -0.3 145,747 + GFF3065 0.82 +0.1 145,747 + GFF3065 0.82 +1.2 145,747 + GFF3065 0.82 -0.1 145,748 - GFF3065 0.82 +1.4 145,789 + GFF3065 0.88 +1.1 145,790 - GFF3065 0.89 +1.0 145,792 + GFF3065 0.89 +0.8 145,792 + GFF3065 0.89 +0.4 145,792 + GFF3065 0.89 +1.2 145,792 + GFF3065 0.89 +0.7 145,792 + GFF3065 0.89 +0.5 145,792 + GFF3065 0.89 +0.9 145,793 - GFF3065 0.89 +0.1 145,793 - GFF3065 0.89 +0.3 145,793 - GFF3065 0.89 -0.2 145,793 - GFF3065 0.89 -0.0
Or see this region's nucleotide sequence