Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3032 and GFF3033 overlap by 25 nucleotides GFF3033 and GFF3034 are separated by 52 nucleotides GFF3034 and GFF3035 overlap by 14 nucleotides
GFF3032 - Methylisocitrate lyase (EC 4.1.3.30), at 109,650 to 110,477
GFF3032
GFF3033 - hypothetical protein, at 110,453 to 110,698
GFF3033
GFF3034 - Enoyl-CoA hydratase (EC 4.2.1.17), at 110,751 to 111,575
GFF3034
GFF3035 - Acyltransferase 3, at 111,562 to 112,662
GFF3035
Position (kb) 110
111
112 Strain fitness (log2 ratio) -1
0
1
2 at 110.278 kb on - strand, within GFF3032 at 110.709 kb on + strand at 110.710 kb on - strand at 110.710 kb on - strand at 110.710 kb on - strand at 110.710 kb on - strand at 110.710 kb on - strand at 110.747 kb on + strand at 110.747 kb on + strand at 110.748 kb on - strand at 110.901 kb on + strand, within GFF3034 at 110.902 kb on - strand, within GFF3034 at 110.902 kb on - strand, within GFF3034 at 111.117 kb on + strand, within GFF3034 at 111.117 kb on + strand, within GFF3034 at 111.117 kb on + strand, within GFF3034 at 111.117 kb on + strand, within GFF3034 at 111.118 kb on - strand, within GFF3034 at 111.725 kb on + strand, within GFF3035 at 112.034 kb on + strand, within GFF3035 at 112.035 kb on - strand, within GFF3035 at 112.035 kb on - strand, within GFF3035 at 112.035 kb on - strand, within GFF3035 at 112.175 kb on + strand, within GFF3035 at 112.175 kb on + strand, within GFF3035 at 112.199 kb on + strand, within GFF3035 at 112.200 kb on - strand, within GFF3035 at 112.362 kb on - strand, within GFF3035 at 112.362 kb on - strand, within GFF3035 at 112.382 kb on + strand, within GFF3035 at 112.383 kb on - strand, within GFF3035 at 112.562 kb on + strand at 112.562 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 110,278 - GFF3032 0.76 -0.6 110,709 + -0.4 110,710 - -0.4 110,710 - +0.2 110,710 - +0.4 110,710 - +0.8 110,710 - +0.4 110,747 + +1.7 110,747 + +1.1 110,748 - -1.5 110,901 + GFF3034 0.18 +0.5 110,902 - GFF3034 0.18 +0.2 110,902 - GFF3034 0.18 +0.6 111,117 + GFF3034 0.44 +0.4 111,117 + GFF3034 0.44 +2.2 111,117 + GFF3034 0.44 -0.6 111,117 + GFF3034 0.44 +0.2 111,118 - GFF3034 0.44 +2.0 111,725 + GFF3035 0.15 +0.0 112,034 + GFF3035 0.43 -0.4 112,035 - GFF3035 0.43 +0.6 112,035 - GFF3035 0.43 -0.3 112,035 - GFF3035 0.43 -0.2 112,175 + GFF3035 0.56 +0.6 112,175 + GFF3035 0.56 -0.4 112,199 + GFF3035 0.58 -0.2 112,200 - GFF3035 0.58 -0.4 112,362 - GFF3035 0.73 +0.7 112,362 - GFF3035 0.73 +0.2 112,382 + GFF3035 0.74 -1.6 112,383 - GFF3035 0.75 +0.4 112,562 + +0.7 112,562 + +0.4
Or see this region's nucleotide sequence