Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3017 and GFF3018 overlap by 4 nucleotides GFF3018 and GFF3019 overlap by 4 nucleotides GFF3019 and GFF3020 are separated by 382 nucleotides GFF3020 and GFF3021 are separated by 4 nucleotides
GFF3017 - FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 94,469 to 95,269
GFF3017
GFF3018 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 95,266 to 96,267
GFF3018
GFF3019 - FIG022199: FAD-binding protein, at 96,264 to 97,601
GFF3019
GFF3020 - hypothetical protein, at 97,984 to 98,100
GFF3020
GFF3021 - Alkanesulfonates transport system permease protein, at 98,105 to 98,932
GFF3021
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 95.420 kb on + strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.421 kb on - strand, within GFF3018 at 95.447 kb on + strand, within GFF3018 at 95.654 kb on + strand, within GFF3018 at 95.654 kb on + strand, within GFF3018 at 95.823 kb on - strand, within GFF3018 at 95.888 kb on + strand, within GFF3018 at 95.888 kb on + strand, within GFF3018 at 95.889 kb on - strand, within GFF3018 at 95.889 kb on - strand, within GFF3018 at 96.023 kb on + strand, within GFF3018 at 96.023 kb on + strand, within GFF3018 at 96.334 kb on + strand at 96.334 kb on + strand at 96.335 kb on - strand at 96.370 kb on + strand at 96.370 kb on + strand at 96.371 kb on - strand at 96.371 kb on - strand at 96.371 kb on - strand at 96.419 kb on - strand, within GFF3019 at 96.517 kb on + strand, within GFF3019 at 96.518 kb on - strand, within GFF3019 at 96.691 kb on + strand, within GFF3019 at 96.691 kb on + strand, within GFF3019 at 96.692 kb on - strand, within GFF3019 at 96.692 kb on - strand, within GFF3019 at 96.712 kb on + strand, within GFF3019 at 96.712 kb on + strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.713 kb on - strand, within GFF3019 at 96.877 kb on + strand, within GFF3019 at 97.016 kb on - strand, within GFF3019 at 97.276 kb on + strand, within GFF3019 at 97.277 kb on - strand, within GFF3019 at 97.277 kb on - strand, within GFF3019 at 97.282 kb on + strand, within GFF3019 at 97.282 kb on + strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.283 kb on - strand, within GFF3019 at 97.638 kb on + strand at 97.638 kb on + strand at 97.638 kb on + strand at 97.639 kb on - strand at 97.653 kb on - strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.681 kb on + strand at 97.682 kb on - strand at 97.792 kb on + strand at 97.792 kb on + strand at 97.792 kb on + strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.793 kb on - strand at 97.869 kb on + strand at 97.869 kb on + strand at 97.869 kb on + strand at 97.927 kb on + strand at 97.927 kb on + strand at 97.927 kb on + strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.928 kb on - strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.981 kb on - strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.990 kb on - strand at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.340 kb on - strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.463 kb on + strand, within GFF3021 at 98.464 kb on + strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.595 kb on + strand, within GFF3021 at 98.595 kb on + strand, within GFF3021
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 95,420 + GFF3018 0.15 -3.5 95,421 - GFF3018 0.15 -0.2 95,421 - GFF3018 0.15 -3.7 95,421 - GFF3018 0.15 -3.0 95,447 + GFF3018 0.18 -2.2 95,654 + GFF3018 0.39 -0.0 95,654 + GFF3018 0.39 -2.0 95,823 - GFF3018 0.56 -3.0 95,888 + GFF3018 0.62 -2.3 95,888 + GFF3018 0.62 -2.9 95,889 - GFF3018 0.62 -1.7 95,889 - GFF3018 0.62 -2.6 96,023 + GFF3018 0.76 -3.3 96,023 + GFF3018 0.76 -3.4 96,334 + +0.3 96,334 + -1.3 96,335 - -1.4 96,370 + +0.0 96,370 + +0.6 96,371 - +1.4 96,371 - -1.8 96,371 - -3.4 96,419 - GFF3019 0.12 -1.4 96,517 + GFF3019 0.19 -2.4 96,518 - GFF3019 0.19 +0.4 96,691 + GFF3019 0.32 -2.0 96,691 + GFF3019 0.32 -2.2 96,692 - GFF3019 0.32 -0.9 96,692 - GFF3019 0.32 -2.3 96,712 + GFF3019 0.33 -3.0 96,712 + GFF3019 0.33 -1.7 96,713 - GFF3019 0.34 -0.3 96,713 - GFF3019 0.34 -1.3 96,713 - GFF3019 0.34 -2.1 96,713 - GFF3019 0.34 -0.3 96,713 - GFF3019 0.34 -1.1 96,713 - GFF3019 0.34 -0.6 96,877 + GFF3019 0.46 -0.3 97,016 - GFF3019 0.56 -3.7 97,276 + GFF3019 0.76 -1.0 97,277 - GFF3019 0.76 -1.3 97,277 - GFF3019 0.76 -2.5 97,282 + GFF3019 0.76 -1.6 97,282 + GFF3019 0.76 -1.4 97,283 - GFF3019 0.76 -0.0 97,283 - GFF3019 0.76 -0.6 97,283 - GFF3019 0.76 -1.5 97,638 + +0.3 97,638 + +0.4 97,638 + +1.0 97,639 - +0.1 97,653 - +0.3 97,681 + +1.0 97,681 + +0.3 97,681 + -0.1 97,681 + -0.5 97,682 - +1.2 97,792 + +0.3 97,792 + -0.8 97,792 + +0.7 97,793 - +0.1 97,793 - +1.0 97,793 - +1.2 97,793 - +1.2 97,793 - +1.2 97,869 + +0.3 97,869 + +0.4 97,869 + +0.3 97,927 + +0.2 97,927 + +1.3 97,927 + +0.3 97,928 - +0.4 97,928 - +0.6 97,928 - +0.9 97,928 - -0.4 97,980 + -1.0 97,980 + +0.6 97,980 + +2.6 97,980 + +0.9 97,981 - +0.6 97,989 + +0.6 97,989 + +0.3 97,989 + -2.3 97,990 - +0.4 98,266 - GFF3021 0.19 +0.7 98,266 - GFF3021 0.19 +0.3 98,266 - GFF3021 0.19 +0.2 98,292 + GFF3021 0.23 -0.1 98,292 + GFF3021 0.23 +0.6 98,292 + GFF3021 0.23 -0.8 98,293 - GFF3021 0.23 +0.7 98,293 - GFF3021 0.23 -0.2 98,339 + GFF3021 0.28 +0.5 98,339 + GFF3021 0.28 -0.2 98,340 - GFF3021 0.28 -0.7 98,376 + GFF3021 0.33 +0.5 98,376 + GFF3021 0.33 +0.2 98,376 + GFF3021 0.33 +0.4 98,376 + GFF3021 0.33 +1.0 98,376 + GFF3021 0.33 +0.4 98,377 - GFF3021 0.33 -2.0 98,377 - GFF3021 0.33 -0.3 98,377 - GFF3021 0.33 -0.6 98,463 + GFF3021 0.43 +3.0 98,464 + GFF3021 0.43 +1.0 98,464 - GFF3021 0.43 -1.2 98,464 - GFF3021 0.43 -0.1 98,464 - GFF3021 0.43 +0.2 98,464 - GFF3021 0.43 -0.8 98,464 - GFF3021 0.43 -0.8 98,595 + GFF3021 0.59 +0.5 98,595 + GFF3021 0.59 -0.2
Or see this region's nucleotide sequence