Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2854

Experiment: Ying_Others16 rep C; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2853 and GFF2854 are separated by 118 nucleotidesGFF2854 and GFF2855 are separated by 10 nucleotidesGFF2855 and GFF2856 are separated by 10 nucleotides GFF2853 - probable two-component sensor, at 441,112 to 442,866 GFF2853 GFF2854 - Probable hydrolase, at 442,985 to 443,908 GFF2854 GFF2855 - UPF0028 protein YchK, at 443,919 to 444,806 GFF2855 GFF2856 - FIG01160152: hypothetical protein, at 444,817 to 445,761 GFF2856 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1at 442.865 kb on - strandat 443.105 kb on + strand, within GFF2854at 443.265 kb on - strand, within GFF2854

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
remove
442,865 - +0.1
443,105 + GFF2854 0.13 +0.9
443,265 - GFF2854 0.30 +0.4

Or see this region's nucleotide sequence