Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2834 and GFF2835 are separated by 19 nucleotides GFF2835 and GFF2836 are separated by 47 nucleotides GFF2836 and GFF2837 are separated by 146 nucleotides
GFF2834 - Probable major facilitator superfamily (MFS) transporter, at 426,170 to 427,759
GFF2834
GFF2835 - Protein yqjC precursor, at 427,779 to 428,165
GFF2835
GFF2836 - Transcriptional regulator, IclR family, at 428,213 to 428,968
GFF2836
GFF2837 - Rieske (2Fe-2S) region, at 429,115 to 430,389
GFF2837
Position (kb) 428
429 Strain fitness (log2 ratio) -1
0
1
2 at 427.232 kb on + strand, within GFF2834 at 427.232 kb on + strand, within GFF2834 at 427.232 kb on + strand, within GFF2834 at 427.232 kb on + strand, within GFF2834 at 427.232 kb on + strand, within GFF2834 at 427.232 kb on + strand, within GFF2834 at 427.233 kb on - strand, within GFF2834 at 427.233 kb on - strand, within GFF2834 at 427.233 kb on - strand, within GFF2834 at 428.201 kb on + strand at 428.201 kb on + strand at 428.202 kb on - strand at 428.214 kb on + strand at 428.215 kb on - strand at 428.215 kb on - strand at 428.316 kb on + strand, within GFF2836 at 428.317 kb on - strand, within GFF2836 at 428.317 kb on - strand, within GFF2836 at 428.448 kb on + strand, within GFF2836 at 428.448 kb on + strand, within GFF2836 at 428.449 kb on - strand, within GFF2836 at 428.449 kb on - strand, within GFF2836 at 428.449 kb on - strand, within GFF2836 at 428.449 kb on - strand, within GFF2836 at 428.487 kb on + strand, within GFF2836 at 428.487 kb on + strand, within GFF2836 at 428.487 kb on + strand, within GFF2836 at 428.487 kb on + strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.488 kb on - strand, within GFF2836 at 428.824 kb on - strand, within GFF2836 at 428.994 kb on + strand at 428.994 kb on + strand at 428.994 kb on + strand at 428.995 kb on - strand at 428.995 kb on - strand at 428.995 kb on - strand at 429.344 kb on - strand, within GFF2837 at 429.382 kb on + strand, within GFF2837 at 429.383 kb on - strand, within GFF2837 at 429.383 kb on - strand, within GFF2837 at 429.469 kb on + strand, within GFF2837 at 429.470 kb on - strand, within GFF2837 at 429.505 kb on + strand, within GFF2837 at 429.505 kb on + strand, within GFF2837 at 429.505 kb on + strand, within GFF2837 at 429.505 kb on + strand, within GFF2837 at 429.505 kb on + strand, within GFF2837 at 429.506 kb on - strand, within GFF2837 at 429.506 kb on - strand, within GFF2837 at 429.506 kb on - strand, within GFF2837 at 429.506 kb on - strand, within GFF2837 at 429.506 kb on - strand, within GFF2837 at 429.599 kb on - strand, within GFF2837 at 429.599 kb on - strand, within GFF2837 at 429.599 kb on - strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.652 kb on + strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.653 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.713 kb on - strand, within GFF2837 at 429.805 kb on + strand, within GFF2837 at 429.805 kb on + strand, within GFF2837 at 429.806 kb on - strand, within GFF2837 at 429.806 kb on - strand, within GFF2837 at 429.808 kb on + strand, within GFF2837 at 429.808 kb on + strand, within GFF2837 at 429.808 kb on + strand, within GFF2837 at 429.809 kb on - strand, within GFF2837
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 427,232 + GFF2834 0.67 +0.5 427,232 + GFF2834 0.67 +0.0 427,232 + GFF2834 0.67 -0.1 427,232 + GFF2834 0.67 +0.9 427,232 + GFF2834 0.67 -0.1 427,232 + GFF2834 0.67 -0.1 427,233 - GFF2834 0.67 -0.4 427,233 - GFF2834 0.67 -0.1 427,233 - GFF2834 0.67 +0.1 428,201 + +0.9 428,201 + -0.9 428,202 - -0.4 428,214 + -0.7 428,215 - -0.4 428,215 - -0.1 428,316 + GFF2836 0.14 +0.1 428,317 - GFF2836 0.14 +0.6 428,317 - GFF2836 0.14 +1.9 428,448 + GFF2836 0.31 -0.3 428,448 + GFF2836 0.31 +0.3 428,449 - GFF2836 0.31 +0.5 428,449 - GFF2836 0.31 -0.5 428,449 - GFF2836 0.31 +0.8 428,449 - GFF2836 0.31 -0.0 428,487 + GFF2836 0.36 +0.6 428,487 + GFF2836 0.36 +0.9 428,487 + GFF2836 0.36 -0.3 428,487 + GFF2836 0.36 +0.3 428,488 - GFF2836 0.36 +1.2 428,488 - GFF2836 0.36 +0.7 428,488 - GFF2836 0.36 +1.2 428,488 - GFF2836 0.36 +0.3 428,488 - GFF2836 0.36 +0.2 428,488 - GFF2836 0.36 +0.2 428,824 - GFF2836 0.81 +0.3 428,994 + -1.7 428,994 + -0.3 428,994 + -0.1 428,995 - -0.7 428,995 - -0.1 428,995 - -0.5 429,344 - GFF2837 0.18 -0.3 429,382 + GFF2837 0.21 +0.3 429,383 - GFF2837 0.21 +0.7 429,383 - GFF2837 0.21 -0.5 429,469 + GFF2837 0.28 +0.8 429,470 - GFF2837 0.28 -0.7 429,505 + GFF2837 0.31 +0.0 429,505 + GFF2837 0.31 +0.3 429,505 + GFF2837 0.31 -1.1 429,505 + GFF2837 0.31 +2.2 429,505 + GFF2837 0.31 -0.7 429,506 - GFF2837 0.31 +0.1 429,506 - GFF2837 0.31 -0.1 429,506 - GFF2837 0.31 -0.0 429,506 - GFF2837 0.31 +0.9 429,506 - GFF2837 0.31 -0.9 429,599 - GFF2837 0.38 -1.4 429,599 - GFF2837 0.38 +0.2 429,599 - GFF2837 0.38 +0.0 429,652 + GFF2837 0.42 +0.8 429,652 + GFF2837 0.42 -0.6 429,652 + GFF2837 0.42 -0.4 429,652 + GFF2837 0.42 -0.8 429,652 + GFF2837 0.42 +0.6 429,652 + GFF2837 0.42 -0.3 429,653 - GFF2837 0.42 -0.5 429,653 - GFF2837 0.42 -0.7 429,653 - GFF2837 0.42 -1.2 429,653 - GFF2837 0.42 +0.1 429,653 - GFF2837 0.42 -0.5 429,653 - GFF2837 0.42 -0.1 429,713 - GFF2837 0.47 +0.0 429,713 - GFF2837 0.47 -0.4 429,713 - GFF2837 0.47 +0.1 429,713 - GFF2837 0.47 +0.3 429,713 - GFF2837 0.47 -1.2 429,713 - GFF2837 0.47 -0.7 429,713 - GFF2837 0.47 -0.2 429,805 + GFF2837 0.54 +0.3 429,805 + GFF2837 0.54 -1.4 429,806 - GFF2837 0.54 +1.5 429,806 - GFF2837 0.54 -0.4 429,808 + GFF2837 0.54 -0.5 429,808 + GFF2837 0.54 -0.2 429,808 + GFF2837 0.54 +0.4 429,809 - GFF2837 0.54 -0.1
Or see this region's nucleotide sequence