Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF282 and GFF283 overlap by 4 nucleotides GFF283 and GFF284 are separated by 46 nucleotides GFF284 and GFF285 are separated by 33 nucleotides
GFF282 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 297,933 to 298,949
GFF282
GFF283 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 298,946 to 299,902
GFF283
GFF284 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 299,949 to 300,698
GFF284
GFF285 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 300,732 to 302,186
GFF285
Position (kb) 298
299
300 Strain fitness (log2 ratio) -1
0
1 at 298.164 kb on + strand, within GFF282 at 298.164 kb on + strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.612 kb on - strand, within GFF282 at 298.785 kb on + strand, within GFF282 at 299.021 kb on + strand at 299.021 kb on + strand at 299.021 kb on + strand at 299.022 kb on - strand at 299.087 kb on + strand, within GFF283 at 299.088 kb on - strand, within GFF283 at 299.288 kb on + strand, within GFF283 at 299.288 kb on + strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.289 kb on - strand, within GFF283 at 299.291 kb on + strand, within GFF283 at 299.291 kb on + strand, within GFF283 at 299.303 kb on + strand, within GFF283 at 299.367 kb on - strand, within GFF283 at 299.367 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.382 kb on - strand, within GFF283 at 299.537 kb on + strand, within GFF283 at 299.538 kb on - strand, within GFF283 at 299.726 kb on + strand, within GFF283 at 299.726 kb on + strand, within GFF283 at 299.727 kb on - strand, within GFF283 at 299.858 kb on + strand at 299.988 kb on + strand at 300.015 kb on + strand at 300.015 kb on + strand at 300.016 kb on - strand at 300.016 kb on - strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.658 kb on - strand at 300.658 kb on - strand at 300.873 kb on + strand at 300.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 298,164 + GFF282 0.23 -0.1 298,164 + GFF282 0.23 -0.2 298,612 - GFF282 0.67 +0.1 298,612 - GFF282 0.67 +0.1 298,785 + GFF282 0.84 +0.8 299,021 + -0.3 299,021 + -0.3 299,021 + +1.1 299,022 - -0.3 299,087 + GFF283 0.15 -0.4 299,088 - GFF283 0.15 -0.2 299,288 + GFF283 0.36 -0.0 299,288 + GFF283 0.36 -0.6 299,289 - GFF283 0.36 -0.3 299,289 - GFF283 0.36 -0.2 299,289 - GFF283 0.36 +0.3 299,291 + GFF283 0.36 -0.2 299,291 + GFF283 0.36 +0.9 299,303 + GFF283 0.37 +0.2 299,367 - GFF283 0.44 +0.2 299,367 - GFF283 0.44 -0.1 299,382 - GFF283 0.46 -0.5 299,382 - GFF283 0.46 -0.3 299,382 - GFF283 0.46 +0.4 299,537 + GFF283 0.62 -0.3 299,538 - GFF283 0.62 +1.1 299,726 + GFF283 0.82 +0.6 299,726 + GFF283 0.82 +0.2 299,727 - GFF283 0.82 -0.8 299,858 + +0.8 299,988 + -0.4 300,015 + -0.3 300,015 + -0.1 300,016 - -0.2 300,016 - -0.7 300,657 + -1.2 300,657 + +0.1 300,657 + -0.2 300,657 + -0.0 300,658 - +0.0 300,658 - +0.9 300,873 + -0.5 300,874 - +1.1
Or see this region's nucleotide sequence