Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2803 and GFF2804 are separated by 34 nucleotides GFF2804 and GFF2805 overlap by 4 nucleotides GFF2805 and GFF2806 are separated by 147 nucleotides
GFF2803 - Hydrogen peroxide-inducible genes activator, at 402,321 to 403,280
GFF2803
GFF2804 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 403,315 to 403,821
GFF2804
GFF2805 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 403,818 to 404,672
GFF2805
GFF2806 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 404,820 to 405,650
GFF2806
Position (kb) 403
404
405 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 403.131 kb on + strand, within GFF2803 at 403.131 kb on + strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.210 kb on - strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.278 kb on + strand at 403.278 kb on + strand at 403.279 kb on - strand at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.432 kb on + strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.815 kb on - strand at 404.815 kb on - strand at 404.821 kb on + strand at 404.930 kb on - strand, within GFF2806 at 405.097 kb on + strand, within GFF2806 at 405.107 kb on - strand, within GFF2806
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 403,131 + GFF2803 0.84 -0.1 403,131 + GFF2803 0.84 +0.1 403,132 - GFF2803 0.84 +0.0 403,132 - GFF2803 0.84 -1.4 403,210 - +0.1 403,242 + -0.4 403,242 + +1.3 403,242 + -0.4 403,243 - +1.5 403,243 - -1.0 403,243 - +0.9 403,243 - -0.2 403,243 - -0.1 403,278 + -0.6 403,278 + +0.1 403,279 - +0.3 403,423 + GFF2804 0.21 -0.6 403,423 + GFF2804 0.21 -1.3 403,423 + GFF2804 0.21 -0.7 403,423 + GFF2804 0.21 +0.1 403,423 + GFF2804 0.21 -2.4 403,423 + GFF2804 0.21 -1.4 403,423 + GFF2804 0.21 -2.0 403,424 - GFF2804 0.21 -1.9 403,424 - GFF2804 0.21 -0.7 403,424 - GFF2804 0.21 -2.2 403,424 - GFF2804 0.21 -0.1 403,424 - GFF2804 0.21 -1.4 403,424 - GFF2804 0.21 -1.7 403,424 - GFF2804 0.21 -1.5 403,424 - GFF2804 0.21 -2.2 403,432 + GFF2804 0.23 -3.4 403,433 - GFF2804 0.23 -2.5 403,433 - GFF2804 0.23 -1.5 403,433 - GFF2804 0.23 -2.5 403,511 - GFF2804 0.39 -1.4 403,511 - GFF2804 0.39 -1.9 403,586 - GFF2804 0.53 -3.2 403,586 - GFF2804 0.53 -1.1 403,586 - GFF2804 0.53 -4.2 404,814 + +1.4 404,814 + +0.2 404,814 + +0.9 404,814 + +0.1 404,815 - -0.2 404,815 - -0.1 404,821 + -0.1 404,930 - GFF2806 0.13 -0.1 405,097 + GFF2806 0.33 +0.4 405,107 - GFF2806 0.35 -0.1
Or see this region's nucleotide sequence