Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2764 and GFF2765 are separated by 50 nucleotides GFF2765 and GFF2766 overlap by 4 nucleotides GFF2766 and GFF2767 are separated by 8 nucleotides GFF2767 and GFF2768 are separated by 95 nucleotides
GFF2764 - Permease of the drug/metabolite transporter (DMT) superfamily, at 363,682 to 364,593
GFF2764
GFF2765 - Uracil-DNA glycosylase, family 4, at 364,644 to 365,507
GFF2765
GFF2766 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 365,504 to 366,085
GFF2766
GFF2767 - TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA, at 366,094 to 366,852
GFF2767
GFF2768 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 366,948 to 368,495
GFF2768
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1 at 365.581 kb on - strand, within GFF2766 at 365.583 kb on + strand, within GFF2766 at 365.584 kb on - strand, within GFF2766 at 365.584 kb on - strand, within GFF2766 at 365.584 kb on - strand, within GFF2766 at 365.584 kb on - strand, within GFF2766 at 365.584 kb on - strand, within GFF2766 at 365.626 kb on - strand, within GFF2766 at 365.626 kb on - strand, within GFF2766 at 365.626 kb on - strand, within GFF2766 at 365.943 kb on + strand, within GFF2766
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 365,581 - GFF2766 0.13 -2.1 365,583 + GFF2766 0.14 +0.2 365,584 - GFF2766 0.14 -1.6 365,584 - GFF2766 0.14 -1.1 365,584 - GFF2766 0.14 -0.1 365,584 - GFF2766 0.14 -0.5 365,584 - GFF2766 0.14 +0.2 365,626 - GFF2766 0.21 -0.1 365,626 - GFF2766 0.21 -0.7 365,626 - GFF2766 0.21 -0.3 365,943 + GFF2766 0.75 -1.5
Or see this region's nucleotide sequence