Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2720 and GFF2721 are separated by 22 nucleotides GFF2721 and GFF2722 are separated by 126 nucleotides GFF2722 and GFF2723 overlap by 17 nucleotides
GFF2720 - Twitching motility protein PilT, at 310,201 to 311,337
GFF2720
GFF2721 - Twitching motility protein PilT, at 311,360 to 312,316
GFF2721
GFF2722 - Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC, at 312,443 to 313,162
GFF2722
GFF2723 - hypothetical protein, at 313,146 to 313,694
GFF2723
Position (kb) 311
312
313 Strain fitness (log2 ratio) -2
-1
0
1
2 at 310.830 kb on - strand, within GFF2720 at 311.496 kb on + strand, within GFF2721 at 311.496 kb on + strand, within GFF2721 at 311.497 kb on - strand, within GFF2721 at 311.497 kb on - strand, within GFF2721 at 311.497 kb on - strand, within GFF2721 at 312.216 kb on + strand, within GFF2721 at 312.216 kb on + strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.249 kb on + strand at 312.249 kb on + strand at 312.249 kb on + strand at 312.249 kb on + strand at 312.250 kb on - strand at 312.250 kb on - strand at 312.320 kb on + strand at 312.320 kb on + strand at 312.320 kb on + strand at 312.321 kb on - strand at 312.397 kb on + strand at 312.430 kb on - strand at 312.442 kb on + strand at 312.442 kb on + strand at 312.614 kb on + strand, within GFF2722 at 312.614 kb on + strand, within GFF2722 at 312.614 kb on + strand, within GFF2722 at 312.615 kb on - strand, within GFF2722 at 312.615 kb on - strand, within GFF2722 at 313.261 kb on + strand, within GFF2723 at 313.261 kb on + strand, within GFF2723 at 313.262 kb on - strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.286 kb on - strand, within GFF2723
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 310,830 - GFF2720 0.55 -0.9 311,496 + GFF2721 0.14 +1.2 311,496 + GFF2721 0.14 +1.1 311,497 - GFF2721 0.14 +1.7 311,497 - GFF2721 0.14 +1.2 311,497 - GFF2721 0.14 +1.1 312,216 + GFF2721 0.89 +1.2 312,216 + GFF2721 0.89 +1.1 312,217 - GFF2721 0.90 +0.9 312,217 - GFF2721 0.90 +1.8 312,217 - GFF2721 0.90 +0.9 312,249 + +2.4 312,249 + +1.4 312,249 + +1.6 312,249 + +0.2 312,250 - +0.9 312,250 - +1.6 312,320 + +2.5 312,320 + +1.5 312,320 + +1.6 312,321 - +1.5 312,397 + +1.3 312,430 - -0.2 312,442 + +0.7 312,442 + -0.3 312,614 + GFF2722 0.24 -2.3 312,614 + GFF2722 0.24 -1.4 312,614 + GFF2722 0.24 -1.4 312,615 - GFF2722 0.24 -0.9 312,615 - GFF2722 0.24 -2.5 313,261 + GFF2723 0.21 -0.7 313,261 + GFF2723 0.21 -1.1 313,262 - GFF2723 0.21 +0.9 313,285 + GFF2723 0.25 -0.7 313,285 + GFF2723 0.25 -0.4 313,285 + GFF2723 0.25 -1.5 313,285 + GFF2723 0.25 -0.1 313,285 + GFF2723 0.25 +0.0 313,286 - GFF2723 0.26 -0.8
Or see this region's nucleotide sequence