Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2702 and GFF2703 are separated by 23 nucleotides GFF2703 and GFF2704 are separated by 57 nucleotides GFF2704 and GFF2705 are separated by 139 nucleotides GFF2705 and GFF2706 are separated by 9 nucleotides
GFF2702 - Membrane-bound metal-dependent hydrolase, at 294,399 to 295,415
GFF2702
GFF2703 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 295,439 to 296,062
GFF2703
GFF2704 - putative exported protein, at 296,120 to 296,716
GFF2704
GFF2705 - hypothetical protein, at 296,856 to 297,209
GFF2705
GFF2706 - Transcriptional regulatory protein, at 297,219 to 298,142
GFF2706
Position (kb) 296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 295.426 kb on + strand at 295.426 kb on + strand at 295.543 kb on + strand, within GFF2703 at 295.543 kb on + strand, within GFF2703 at 295.543 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.578 kb on + strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.579 kb on - strand, within GFF2703 at 295.650 kb on + strand, within GFF2703 at 295.651 kb on - strand, within GFF2703 at 295.761 kb on + strand, within GFF2703 at 295.869 kb on + strand, within GFF2703 at 295.869 kb on + strand, within GFF2703 at 295.869 kb on + strand, within GFF2703 at 295.870 kb on - strand, within GFF2703 at 295.929 kb on + strand, within GFF2703 at 296.232 kb on + strand, within GFF2704 at 296.247 kb on + strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.263 kb on - strand, within GFF2704 at 296.409 kb on + strand, within GFF2704 at 296.410 kb on - strand, within GFF2704 at 296.410 kb on - strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.640 kb on + strand, within GFF2704 at 296.640 kb on + strand, within GFF2704 at 296.641 kb on - strand, within GFF2704 at 296.641 kb on - strand, within GFF2704 at 296.649 kb on + strand, within GFF2704 at 296.649 kb on + strand, within GFF2704 at 296.650 kb on - strand, within GFF2704 at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.698 kb on - strand at 296.698 kb on - strand at 296.703 kb on + strand at 296.704 kb on - strand at 296.704 kb on - strand at 296.728 kb on + strand at 296.729 kb on - strand at 297.060 kb on + strand, within GFF2705 at 297.060 kb on + strand, within GFF2705 at 297.367 kb on - strand, within GFF2706
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 295,426 + -0.9 295,426 + -0.2 295,543 + GFF2703 0.17 -0.0 295,543 + GFF2703 0.17 -1.2 295,543 + GFF2703 0.17 +0.5 295,578 + GFF2703 0.22 -1.5 295,578 + GFF2703 0.22 +0.1 295,578 + GFF2703 0.22 -0.3 295,578 + GFF2703 0.22 -0.7 295,578 + GFF2703 0.22 +0.1 295,578 + GFF2703 0.22 +0.6 295,579 - GFF2703 0.22 +0.3 295,579 - GFF2703 0.22 +0.3 295,579 - GFF2703 0.22 -1.1 295,579 - GFF2703 0.22 -0.2 295,579 - GFF2703 0.22 -0.3 295,579 - GFF2703 0.22 -0.7 295,579 - GFF2703 0.22 +0.9 295,579 - GFF2703 0.22 +0.4 295,579 - GFF2703 0.22 -0.1 295,579 - GFF2703 0.22 -0.4 295,579 - GFF2703 0.22 -0.8 295,650 + GFF2703 0.34 -0.3 295,651 - GFF2703 0.34 -0.3 295,761 + GFF2703 0.52 -0.3 295,869 + GFF2703 0.69 -3.3 295,869 + GFF2703 0.69 +0.3 295,869 + GFF2703 0.69 -0.4 295,870 - GFF2703 0.69 -0.4 295,929 + GFF2703 0.79 +0.4 296,232 + GFF2704 0.19 -0.1 296,247 + GFF2704 0.21 +0.1 296,248 - GFF2704 0.21 -0.1 296,248 - GFF2704 0.21 -0.7 296,248 - GFF2704 0.21 -0.3 296,248 - GFF2704 0.21 +0.2 296,248 - GFF2704 0.21 -0.1 296,263 - GFF2704 0.24 -0.2 296,409 + GFF2704 0.48 +0.4 296,410 - GFF2704 0.49 -0.5 296,410 - GFF2704 0.49 -0.5 296,436 + GFF2704 0.53 -0.1 296,436 + GFF2704 0.53 +0.1 296,436 + GFF2704 0.53 -0.2 296,436 + GFF2704 0.53 +0.9 296,437 - GFF2704 0.53 -0.1 296,437 - GFF2704 0.53 -0.4 296,437 - GFF2704 0.53 -0.8 296,437 - GFF2704 0.53 -0.5 296,437 - GFF2704 0.53 +0.1 296,437 - GFF2704 0.53 -0.7 296,437 - GFF2704 0.53 -0.4 296,437 - GFF2704 0.53 -0.4 296,574 + GFF2704 0.76 -0.2 296,574 + GFF2704 0.76 -0.5 296,574 + GFF2704 0.76 +0.9 296,575 - GFF2704 0.76 +0.5 296,575 - GFF2704 0.76 +0.0 296,575 - GFF2704 0.76 -0.1 296,575 - GFF2704 0.76 -0.5 296,575 - GFF2704 0.76 +0.3 296,640 + GFF2704 0.87 -1.7 296,640 + GFF2704 0.87 +0.1 296,641 - GFF2704 0.87 +1.7 296,641 - GFF2704 0.87 -0.8 296,649 + GFF2704 0.89 +0.1 296,649 + GFF2704 0.89 +0.2 296,650 - GFF2704 0.89 +0.1 296,697 + -1.0 296,697 + +0.2 296,697 + -0.9 296,697 + -0.2 296,697 + -0.9 296,697 + -0.5 296,698 - +0.1 296,698 - -0.1 296,703 + +0.4 296,704 - +1.1 296,704 - -1.1 296,728 + -0.3 296,729 - -0.7 297,060 + GFF2705 0.58 +0.4 297,060 + GFF2705 0.58 +0.1 297,367 - GFF2706 0.16 +0.7
Or see this region's nucleotide sequence