Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2703

Experiment: Ying_Others16 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2702 and GFF2703 are separated by 23 nucleotidesGFF2703 and GFF2704 are separated by 57 nucleotidesGFF2704 and GFF2705 are separated by 139 nucleotides GFF2702 - Membrane-bound metal-dependent hydrolase, at 294,399 to 295,415 GFF2702 GFF2703 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 295,439 to 296,062 GFF2703 GFF2704 - putative exported protein, at 296,120 to 296,716 GFF2704 GFF2705 - hypothetical protein, at 296,856 to 297,209 GFF2705 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1at 294.556 kb on + strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.557 kb on - strand, within GFF2702at 294.622 kb on + strand, within GFF2702at 294.623 kb on - strand, within GFF2702at 294.658 kb on + strand, within GFF2702at 294.659 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.746 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 294.914 kb on - strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.012 kb on + strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.013 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.042 kb on - strand, within GFF2702at 295.087 kb on + strand, within GFF2702at 295.101 kb on - strand, within GFF2702at 295.426 kb on + strandat 295.426 kb on + strandat 295.543 kb on + strand, within GFF2703at 295.543 kb on + strand, within GFF2703at 295.543 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.578 kb on + strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.579 kb on - strand, within GFF2703at 295.650 kb on + strand, within GFF2703at 295.651 kb on - strand, within GFF2703at 295.761 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.869 kb on + strand, within GFF2703at 295.870 kb on - strand, within GFF2703at 295.929 kb on + strand, within GFF2703at 296.232 kb on + strand, within GFF2704at 296.247 kb on + strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.263 kb on - strand, within GFF2704at 296.409 kb on + strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.640 kb on + strand, within GFF2704at 296.640 kb on + strand, within GFF2704at 296.641 kb on - strand, within GFF2704at 296.641 kb on - strand, within GFF2704at 296.649 kb on + strand, within GFF2704at 296.649 kb on + strand, within GFF2704at 296.650 kb on - strand, within GFF2704at 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.698 kb on - strandat 296.698 kb on - strandat 296.703 kb on + strandat 296.704 kb on - strandat 296.704 kb on - strandat 296.728 kb on + strandat 296.729 kb on - strandat 297.060 kb on + strand, within GFF2705at 297.060 kb on + strand, within GFF2705

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3
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294,556 + GFF2702 0.15 +0.1
294,557 - GFF2702 0.16 +0.1
294,557 - GFF2702 0.16 +0.1
294,622 + GFF2702 0.22 -1.7
294,623 - GFF2702 0.22 +0.1
294,658 + GFF2702 0.25 +0.2
294,659 - GFF2702 0.26 -0.7
294,746 - GFF2702 0.34 -0.5
294,746 - GFF2702 0.34 +0.3
294,746 - GFF2702 0.34 +0.1
294,746 - GFF2702 0.34 +0.4
294,914 - GFF2702 0.51 +0.0
294,914 - GFF2702 0.51 +0.6
295,012 + GFF2702 0.60 +0.1
295,012 + GFF2702 0.60 +0.0
295,013 - GFF2702 0.60 -0.1
295,013 - GFF2702 0.60 +1.0
295,013 - GFF2702 0.60 +0.1
295,013 - GFF2702 0.60 +0.9
295,013 - GFF2702 0.60 +0.7
295,042 - GFF2702 0.63 +0.2
295,042 - GFF2702 0.63 -0.7
295,087 + GFF2702 0.68 -0.5
295,101 - GFF2702 0.69 +0.2
295,426 + -0.9
295,426 + -0.2
295,543 + GFF2703 0.17 -0.0
295,543 + GFF2703 0.17 -1.2
295,543 + GFF2703 0.17 +0.5
295,578 + GFF2703 0.22 -1.5
295,578 + GFF2703 0.22 +0.1
295,578 + GFF2703 0.22 -0.3
295,578 + GFF2703 0.22 -0.7
295,578 + GFF2703 0.22 +0.1
295,578 + GFF2703 0.22 +0.6
295,579 - GFF2703 0.22 +0.3
295,579 - GFF2703 0.22 +0.3
295,579 - GFF2703 0.22 -1.1
295,579 - GFF2703 0.22 -0.2
295,579 - GFF2703 0.22 -0.3
295,579 - GFF2703 0.22 -0.7
295,579 - GFF2703 0.22 +0.9
295,579 - GFF2703 0.22 +0.4
295,579 - GFF2703 0.22 -0.1
295,579 - GFF2703 0.22 -0.4
295,579 - GFF2703 0.22 -0.8
295,650 + GFF2703 0.34 -0.3
295,651 - GFF2703 0.34 -0.3
295,761 + GFF2703 0.52 -0.3
295,869 + GFF2703 0.69 -3.3
295,869 + GFF2703 0.69 +0.3
295,869 + GFF2703 0.69 -0.4
295,870 - GFF2703 0.69 -0.4
295,929 + GFF2703 0.79 +0.4
296,232 + GFF2704 0.19 -0.1
296,247 + GFF2704 0.21 +0.1
296,248 - GFF2704 0.21 -0.1
296,248 - GFF2704 0.21 -0.7
296,248 - GFF2704 0.21 -0.3
296,248 - GFF2704 0.21 +0.2
296,248 - GFF2704 0.21 -0.1
296,263 - GFF2704 0.24 -0.2
296,409 + GFF2704 0.48 +0.4
296,410 - GFF2704 0.49 -0.5
296,410 - GFF2704 0.49 -0.5
296,436 + GFF2704 0.53 -0.1
296,436 + GFF2704 0.53 +0.1
296,436 + GFF2704 0.53 -0.2
296,436 + GFF2704 0.53 +0.9
296,437 - GFF2704 0.53 -0.1
296,437 - GFF2704 0.53 -0.4
296,437 - GFF2704 0.53 -0.8
296,437 - GFF2704 0.53 -0.5
296,437 - GFF2704 0.53 +0.1
296,437 - GFF2704 0.53 -0.7
296,437 - GFF2704 0.53 -0.4
296,437 - GFF2704 0.53 -0.4
296,574 + GFF2704 0.76 -0.2
296,574 + GFF2704 0.76 -0.5
296,574 + GFF2704 0.76 +0.9
296,575 - GFF2704 0.76 +0.5
296,575 - GFF2704 0.76 +0.0
296,575 - GFF2704 0.76 -0.1
296,575 - GFF2704 0.76 -0.5
296,575 - GFF2704 0.76 +0.3
296,640 + GFF2704 0.87 -1.7
296,640 + GFF2704 0.87 +0.1
296,641 - GFF2704 0.87 +1.7
296,641 - GFF2704 0.87 -0.8
296,649 + GFF2704 0.89 +0.1
296,649 + GFF2704 0.89 +0.2
296,650 - GFF2704 0.89 +0.1
296,697 + -1.0
296,697 + +0.2
296,697 + -0.9
296,697 + -0.2
296,697 + -0.9
296,697 + -0.5
296,698 - +0.1
296,698 - -0.1
296,703 + +0.4
296,704 - +1.1
296,704 - -1.1
296,728 + -0.3
296,729 - -0.7
297,060 + GFF2705 0.58 +0.4
297,060 + GFF2705 0.58 +0.1

Or see this region's nucleotide sequence