Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2689 and GFF2690 are separated by 3 nucleotides GFF2690 and GFF2691 overlap by 38 nucleotides GFF2691 and GFF2692 are separated by 10 nucleotides GFF2692 and GFF2693 are separated by 31 nucleotides GFF2693 and GFF2694 are separated by 87 nucleotides
GFF2689 - Glycine betaine transporter OpuD, at 279,879 to 281,393
GFF2689
GFF2690 - Multiple antibiotic resistance protein marC, at 281,397 to 282,080
GFF2690
GFF2691 - Glutathione S-transferase domain protein, at 282,043 to 282,717
GFF2691
GFF2692 - hypothetical protein, at 282,728 to 283,021
GFF2692
GFF2693 - Acetyltransferase (EC 2.3.1.-), at 283,053 to 283,340
GFF2693
GFF2694 - Ferredoxin reductase, at 283,428 to 284,507
GFF2694
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.602 kb on - strand, within GFF2690 at 281.769 kb on + strand, within GFF2690 at 281.919 kb on + strand, within GFF2690 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.389 kb on + strand, within GFF2691 at 282.390 kb on - strand, within GFF2691 at 282.680 kb on + strand at 282.681 kb on - strand at 282.696 kb on - strand at 282.701 kb on + strand at 282.702 kb on - strand at 282.702 kb on - strand at 282.702 kb on - strand at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.930 kb on + strand, within GFF2692 at 282.931 kb on - strand, within GFF2692 at 283.105 kb on + strand, within GFF2693 at 283.210 kb on + strand, within GFF2693 at 283.210 kb on + strand, within GFF2693 at 283.211 kb on - strand, within GFF2693 at 283.211 kb on - strand, within GFF2693 at 283.211 kb on - strand, within GFF2693 at 283.211 kb on - strand, within GFF2693 at 283.211 kb on - strand, within GFF2693 at 283.251 kb on + strand, within GFF2693 at 283.252 kb on + strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.253 kb on - strand, within GFF2693 at 283.375 kb on + strand at 283.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 281,602 - GFF2690 0.30 +1.9 281,769 + GFF2690 0.54 -0.3 281,919 + GFF2690 0.76 -0.1 282,389 + GFF2691 0.51 +0.0 282,389 + GFF2691 0.51 +0.9 282,389 + GFF2691 0.51 +0.6 282,389 + GFF2691 0.51 -0.2 282,390 - GFF2691 0.51 +1.1 282,680 + +0.5 282,681 - +0.5 282,696 - +0.1 282,701 + -2.4 282,702 - -1.4 282,702 - -0.3 282,702 - -0.1 282,930 + GFF2692 0.69 +0.4 282,930 + GFF2692 0.69 +0.2 282,930 + GFF2692 0.69 +0.7 282,930 + GFF2692 0.69 +0.6 282,930 + GFF2692 0.69 +1.3 282,931 - GFF2692 0.69 +0.4 283,105 + GFF2693 0.18 -0.9 283,210 + GFF2693 0.55 -0.1 283,210 + GFF2693 0.55 +0.0 283,211 - GFF2693 0.55 +0.1 283,211 - GFF2693 0.55 +1.5 283,211 - GFF2693 0.55 +0.2 283,211 - GFF2693 0.55 -1.3 283,211 - GFF2693 0.55 +0.4 283,251 + GFF2693 0.69 -0.2 283,252 + GFF2693 0.69 -0.1 283,253 - GFF2693 0.69 +0.6 283,253 - GFF2693 0.69 -0.3 283,253 - GFF2693 0.69 -0.1 283,253 - GFF2693 0.69 +0.1 283,253 - GFF2693 0.69 +0.3 283,253 - GFF2693 0.69 +0.1 283,253 - GFF2693 0.69 -1.1 283,375 + +0.3 283,376 - -0.0
Or see this region's nucleotide sequence