Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2603 and GFF2604 are separated by 8 nucleotides GFF2604 and GFF2605 are separated by 15 nucleotides GFF2605 and GFF2606 overlap by 4 nucleotides
GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526
GFF2603
GFF2604 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 196,535 to 196,885
GFF2604
GFF2605 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 196,901 to 197,224
GFF2605
GFF2606 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 197,221 to 198,645
GFF2606
Position (kb) 196
197 Strain fitness (log2 ratio) -1
0
1
2 at 195.543 kb on + strand, within GFF2603 at 195.543 kb on + strand, within GFF2603 at 195.544 kb on - strand, within GFF2603 at 195.807 kb on + strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.837 kb on + strand, within GFF2603 at 195.838 kb on - strand, within GFF2603 at 196.039 kb on - strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on + strand, within GFF2603 at 196.398 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.399 kb on - strand, within GFF2603 at 196.587 kb on - strand, within GFF2604 at 196.587 kb on - strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.661 kb on + strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.662 kb on - strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.694 kb on + strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.695 kb on - strand, within GFF2604 at 196.790 kb on + strand, within GFF2604 at 196.911 kb on + strand at 196.912 kb on - strand at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.955 kb on + strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 196.956 kb on - strand, within GFF2605 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.698 kb on + strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606 at 197.699 kb on - strand, within GFF2606
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 195,543 + GFF2603 0.11 +0.4 195,543 + GFF2603 0.11 -0.2 195,544 - GFF2603 0.11 -0.2 195,807 + GFF2603 0.35 -1.1 195,808 - GFF2603 0.35 -0.2 195,808 - GFF2603 0.35 +0.0 195,808 - GFF2603 0.35 +0.0 195,837 + GFF2603 0.37 -0.3 195,838 - GFF2603 0.37 +0.3 196,039 - GFF2603 0.56 -0.3 196,398 + GFF2603 0.88 -0.1 196,398 + GFF2603 0.88 -1.4 196,398 + GFF2603 0.88 +0.4 196,398 - GFF2603 0.88 -0.3 196,399 - GFF2603 0.88 +2.5 196,399 - GFF2603 0.88 +0.3 196,399 - GFF2603 0.88 -0.0 196,587 - GFF2604 0.15 -0.2 196,587 - GFF2604 0.15 +0.9 196,661 + GFF2604 0.36 +1.1 196,661 + GFF2604 0.36 +0.6 196,662 - GFF2604 0.36 +0.9 196,662 - GFF2604 0.36 +0.5 196,662 - GFF2604 0.36 +0.7 196,694 + GFF2604 0.45 -0.5 196,694 + GFF2604 0.45 +0.7 196,694 + GFF2604 0.45 +0.1 196,695 - GFF2604 0.46 +0.9 196,695 - GFF2604 0.46 +2.3 196,695 - GFF2604 0.46 +0.9 196,695 - GFF2604 0.46 +0.4 196,790 + GFF2604 0.73 +0.0 196,911 + -0.4 196,912 - -1.7 196,955 + GFF2605 0.17 -0.9 196,955 + GFF2605 0.17 -0.3 196,955 + GFF2605 0.17 -0.3 196,955 + GFF2605 0.17 -0.1 196,955 + GFF2605 0.17 -0.6 196,956 - GFF2605 0.17 -0.8 196,956 - GFF2605 0.17 -0.8 196,956 - GFF2605 0.17 -0.6 196,956 - GFF2605 0.17 -0.4 196,956 - GFF2605 0.17 -0.2 196,956 - GFF2605 0.17 -0.1 196,956 - GFF2605 0.17 -0.2 196,956 - GFF2605 0.17 +1.3 196,956 - GFF2605 0.17 +0.4 197,698 + GFF2606 0.33 -0.7 197,698 + GFF2606 0.33 +0.2 197,698 + GFF2606 0.33 +0.4 197,698 + GFF2606 0.33 +0.6 197,699 - GFF2606 0.34 -0.2 197,699 - GFF2606 0.34 -0.4 197,699 - GFF2606 0.34 +0.5 197,699 - GFF2606 0.34 +0.9
Or see this region's nucleotide sequence